Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq226 168 1e-36 seq29 147 5e-30 seq1 98.7 2e-15 seq2379 84.2 5e-11 >seq226 Length=41712 Score = 168 bits (186), Expect = 1e-36 Identities = 152/191 (80%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969 |||||||||||||||| || || ||||| ||||| ||||| | |||||| || || || | Sbjct 24115 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 24174 Query 282970 TCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTAT 283029 ||||||| |||||||| ||||| || ||||||||||| ||||| || || || ||| Sbjct 24175 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 24234 Query 283030 CGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 |||| ||||| || | |||||| || |||||||| || || || || | ||||| |||| Sbjct 24235 CGATCGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGA 24294 Query 283090 ATATCTGCATT 283100 | ||||||||| Sbjct 24295 AAATCTGCATT 24305 >seq29 Length=140563 Score = 147 bits (162), Expect = 5e-30 Identities = 688/1065 (65%), Gaps = 53/1065 (5%) Strand=Plus/Plus Query 316154 CAAGTGATTCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCA 316213 ||||| |||| |||||||| ||||| | | | ||| || || || ||||| | |||| Sbjct 70238 CAAGTAATTCCTTGTCTTCTCCGGATTGAAATCTCCACTGAATATATTGATTTGCAGTCA 70297 Query 316214 TGTCAAGATGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATAT 316273 || ||||| | |||||||| ||||| |||| |||||| || || |||| || | Sbjct 70298 GATCGAGATGTGCTTCGATGTGATGGAATGCGTTCTGTGCAACATAGGCAAATCGTAAGC 70357 Query 316274 TTGGATGCTTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGA 316333 ||||||| ||||| || | || | |||| |||| | || || |||| || || | Sbjct 70358 TTGGATGTTTCCACACAGTTCCACTCGTAGGCTCCACTTCACCAGTCAGCATCTTGATCA 70417 Query 316334 GAGTACTTTTTCCCGCGCCGTTTTCACCCACGACACCGATCCTGGAGTTGAGC-GATACC 316392 ||| |||||| || || ||| |||| ||| |||| | || |||| | || Sbjct 70418 AGGTAGATTTTCCTGCTCCATTTGGTCCCAACACAGCGATTC--GACTTGACAAGGCACA 70475 Query 316393 TGGG-CATTCACGTTGTCGA-AGACCAGTTTGTC-CGTCCCAGGATACTTGAA--ACCCA 316447 | | || | || || |||| ||||||| ||||| |||||| || | | | | Sbjct 70476 AGTGACAGAGATATTACTGATAGACG-GTTTGTCTCGTCC-AGGATAAGTGTATGAGCAA 70533 Query 316448 CCCCGC-GAAGCTTCATGATGGC--ACGGTCCTTCGAAGTGATACCCTCGAGAAAGCCGG 316504 | | || | | || ||| || | ||| ||||| | | ||||| || | Sbjct 70534 TTCGTCAGACGGATAAT--TGGTTTACCCTTGTTCT---TGATATCTGCAAGAAAACCCG 70588 Query 316505 GTTCGGGGAATTTCCAC--GTAGTCTTCGTCTCGGCGAGCGTGTAGTAACTTGCAGATTC 316562 |||| || || || | | | | || || | | |||||||||| | || Sbjct 70589 GTTCAGGAAACTTGAAGTGGAATAATGCGGCTT--CCAATTCGTAGTAACTTCTGGCCTC 70646 Query 316563 GGGACGCTTC---TTCACGAATTCGGACAGATTTCCTTTATACTTCTTCAGCTTCAGGTT 316619 || |||| || || || || |||| ||| ||||| ||| |||| ||||| | Sbjct 70647 AGG---CTTCACTTTGACAAACTCTGACAAATTACCTTTGTACGTCTTGAGCTTGCGT-- 70701 Query 316620 GGGTTCGTAATGGATGATAGAAGTACAGACAGCATCGAGGAAACCAGAATCGTGTGATAC 316679 | |||||| || | || ||||| ||| ||| | ||| |||| ||||| ||||| Sbjct 70702 -GCTTCGTAGTGAACAATGTTCGTACAAACATGATCCAAGAATCCAGGGTCGTGGGATAC 70760 Query 316680 AATCACACATGAAACGCCTTTTAGGTTGACCAGATAGTCGATCAGCCAGCTCACATTCGA 316739 ||||| || | |||| || || || ||||| ||||||| |||||| Sbjct 70761 AATCATACTGGTAACGTTGGGTAAATTATTCAAATAGTTTTCCAGCCAGGCGACATTCTT 70820 Query 316740 CACAGAAAGATGGTTGGTCGGTTCGTCAAGTAGTAGTAGCTTCGCGTCCAACAGCATAGC 316799 ||| |||||||| || ||||| ||||| || || | | || | || || ||| || Sbjct 70821 TACATCGAGATGGTTCGTAGGTTCATCAAGAAGCAGAACATCAGCTTGCATCAACATGGC 70880 Query 316800 GCGTGCGAGAGCAAGCTTCATTTTCCACCCCCCGGAAAGAGTGTTAATCGGGGCAGATTG 316859 || ||||| | |||||||||||||| || || || | || | ||| | ||| Sbjct 70881 ACGAGCGAGTTCTAGCTTCATTTTCCATCCACCCGATAAAGATGAGACCGGTAAATGTTG 70940 Query 316860 GCGCTCAACATCAAAGCCAACTGATTCGAGAGTAGACACGATTTTTTCACGAGAC--CAT 316917 ||| || || || || | || || || || | || ||| || ||| Sbjct 70941 CATTTCATCAGTGAACCCGAC-GCTT---GA-TAAAC-------TATCGCGA-ACTTCAT 70987 Query 316918 ---GTGTT--TTCTTTAACTTGGTCGTCATTGGCAATGAAGTCAACGATAGACGTGTTAG 316972 ||| | |||||| | | || ||| ||||| || | || || | | Sbjct 70988 CTCGTGGTACTTCTTTCAACTCTTCATCACAAAACATGAATTCTATGACAGGAAGCATCG 71047 Query 316973 ATTCGGATCCGTCGAGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTTCGTCGGGA 317032 ||| || | | | | ||| || ||| | |||| || || ||| || | ||| | Sbjct 71048 CTTCAGAAGCCTGCAAATTATGTTCGACAAACACAGTCTTTAGCTCATCTTTAGACGGAA 71107 Query 317033 ACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCA-CCATTG 317091 | ||||||| || ||||| | || || |||||||| || || || || ||| ||||| Sbjct 71108 ATCCTTCCAGTTGGCCGTTAGCGATGGCTCTCATCAGCGTTGATTTACC-GCATCCATTT 71166 Query 317092 GGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGA 317151 || || || |||||||| |||| ||| |||||| | || |||| ||||||||| ||| Sbjct 71167 GGACCACAGAGACCATAACGATGTCCTCTCTTCAAACGCAACCGGGCGTTGTTCAGTAGA 71226 Query 317152 ATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCC 317196 ||| |||||||||| |||| |||||||||||||| ||| || ||| Sbjct 71227 ATCATACCACCATACGCCAAAGAGAACTCACAATTACATAGATCC 71271 >seq1 Length=398508 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || || || |||||||| |||||||| || | ||||||||||||| ||| Sbjct 11236 AGAGTACGACCGTCTTCAAGTTGTTTTCCGGCAAAAATTAGACGTTGTTGGTCAGGAGGA 11295 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||||||||| ||| ||||| || || | || || ||||||| | ||| || Sbjct 11296 ATTCCTTCCTTGTCTTGAATC-TTGCTCTTGACATTGTCAATCGTGTCCGCTGATTCTAC 11354 Query 283052 TTCGAGAGTGATCGTCTTACC 283072 |||||| || || || || || Sbjct 11355 TTCGAGTGTAATTGTTTTTCC 11375 >seq2379 Length=599 Score = 84.2 bits (92), Expect = 5e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||||||||| |||||||||||||| || |||| ||||||||||||| || Sbjct 287 TTAGTATAGTGGTTAGTATACCTGCCTGTCACGCGGGTGACCCGGGTTCAATTCCCGGA 345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046669246419264