Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq23 269 3e-67 >seq23 Length=155023 Score = 269 bits (298), Expect = 3e-67 Identities = 634/940 (67%), Gaps = 28/940 (3%) Strand=Plus/Plus Query 23160 TTAAAAATCTTCATCTAAAGTGAATT-TCACTGCTTTATCACTATTCAT-AACACCCATT 23217 ||| |||||| ||||||||||||| | || |||| || | || |||||| | Sbjct 35997 TTAGAAATCTGCATCTAAAGTGAAAACTTGCTCCTTTG-CAG-AGACACCAACACCAGAT 36054 Query 23218 TTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTT 23277 || |||||| ||||| ||| | || ||||| ||||| || || | | || || | Sbjct 36055 TTCGCATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAATCATA 36114 Query 23278 TCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGATAATTCCTT-TAA 23336 ||||| | ||||| |||||||||| | ||||| | | | | || | | | ||| Sbjct 36115 TCCATCCAGTCAAAGGGATTAGAAGCGTGATATA-ACTTGCTGACGCCAAGTGCATGTAA 36173 Query 23337 AAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAG 23396 | | ||| || ||||| || || ||||||| ||||||| | || || || ||||| Sbjct 36174 CAATCGATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAG 36233 Query 23397 TTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTAT 23456 | ||||||| | ||| || ||| || ||| ||| ||| || || ||| || Sbjct 36234 CTCGACTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAATGAT 36293 Query 23457 TTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTTAA--ACAATAAACATGCA 23514 | | |||| |||| | | | ||||| | | | ||| | ||||||| Sbjct 36294 TGCATGAATAGAGCCTTC--TGGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGCA 36351 Query 23515 AAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGC 23574 || ||||||||||| |||||||| | ||| || | ||||| ||||| | ||| ||| Sbjct 36352 AAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGC 36411 Query 23575 ATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCA-AATGATCCGGAAAAGAAAATACC 23633 || ||||||||||| || | ||||||||| | |||| ||||||||||| || || || || Sbjct 36412 ATCAATCCTCGTTTCTTCAGCCAAAATATAG-AGCAGAATGATCCGGAGAAAAAGATTCC 36470 Query 23634 CTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATA---ATCAGAAAT 23690 || || ||||||||||| || | | | |||| | |||| | ||| | Sbjct 36471 TTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTTTGGATCGCA--- 36527 Query 23691 CCAtttttttGTCCAATTAGCCTTCAATT--TTACACACTCAATTGTTTCAATTGCTTTT 23748 |||||| | ||| | || || ||| | || ||| ||||||||||| || Sbjct 36528 CCATTTCAACGCCCATTGTGCTTT--ATTGGTAACGCACGGGATTGTTTCAATCGCGC-- 36583 Query 23749 AAGAGAAAAGTTTTTTCTTCATT---ATCTGTTATATATGTATCAATTAGTAAACTATAC 23805 | || ||| | || |||| | |||| | || ||||||||||| | ||| |||| Sbjct 36584 -ACAGTAAATGCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATAC 36642 Query 23806 ATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGAC 23865 | ||| || || |||||||| || ||||| ||||| || ||||| |||| |||||| | Sbjct 36643 ACTTCCGAGTGTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGG 36702 Query 23866 AATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCA 23925 | ||||| ||| | || | | || | |||||| || ||||| |||||||| || Sbjct 36703 ATCTGAACCTCACTGCTGAAATTCATGGCGAGATTTTCATTGACAATTCCATCACTGGCT 36762 Query 23926 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAA 23985 |||||||| || | || | ||| ||||| |||||||||| |||| || ||| Sbjct 36763 GCAAAGAAGGCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATATATTAAGCCAG 36822 Query 23986 TCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGC 24045 ||||| || || | ||||| | ||| || | |||||||| |||||| || | Sbjct 36823 TCATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCTTTC 36882 Query 24046 TTATACATTAGCCAAATATCATTATGTTGTATTGGAAATA 24085 |||||||| |||||| ||| |||||||| ||||||| Sbjct 36883 TTATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATA 36922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521453998982400