Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3629 262 4e-65 >seq3629 Length=149247 Score = 262 bits (290), Expect = 4e-65 Identities = 596/878 (68%), Gaps = 24/878 (3%) Strand=Plus/Plus Query 15917 TAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATA 15976 || || | ||||||||| || || ||||| |||||||| | | ||| || | ||||| Sbjct 30653 TATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAATCATATCCATC 30712 Query 15977 AAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCC-GTAACTAATCT 16035 | ||||||||||||| ||| | ||| ||| | || ||| | ||||| |||| Sbjct 30713 CAGTCAAAGGGATTAGAAGCGTGATATAACTTGCTGACGCCAAGTGCATGTAAC-AATCG 30771 Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAG-TCGTA 16094 ||| || ||||| || || ||||||| ||| || |||| ||||| || || ||| | Sbjct 30772 ATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCTCG-A 30830 Query 16095 CCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGG 16154 | ||||| | | | || ||||| |||||| || | ||| || || |||||| | Sbjct 30831 CTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAATGATTGCA- 30889 Query 16155 TGGCTCGTGT-TTCAGACGGTGTATGGTTTAGGTGTTTAAA---CATTAGACACGCGAAG 16210 || | | | ||| | | ||| ||| |||| | ||| ||||| || ||| Sbjct 30890 TGAATAGAGCCTTCTGGAAGCTTAT---TTACCAGTTTCGAGTACATCAGACATGCAAAG 30946 Query 16211 TCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATT 16270 || |||||||||||||| || | ||||| || || || ||||| | || ||||| Sbjct 30947 TCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCATC 31006 Query 16271 TTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGAATATACCCTC 16329 |||||||||||| | ||| ||||| | |||| ||||| || || || || || || || Sbjct 31007 AATCCTCGTTTCTTCAGCCAAAATATAG-AGCAGAATGATCCGGAGAAAAAGATTCCTTC 31065 Query 16330 AACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCAT-CTTTATTACGAATCCATT 16388 || | ||||| || | | || ||| || ||| |||| |||| || | ||||| Sbjct 31066 GACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTTTGGATCGCA-CCATT 31124 Query 16389 TCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATT 16448 || |||||| ||||| | | | || || ||||| || || | || | Sbjct 31125 TCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCATAGTAAAT 31184 Query 16449 TCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGT 16508 || |||||| ||| | || || |||||||||| ||| |||| ||| |||| Sbjct 31185 GCTGTTTTTCGGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAGT 31244 Query 16509 GTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTT 16568 |||| || ||||| || || || |||||||| ||||||||||| |||| ||||| || | Sbjct 31245 GTATATTTTCTATTGCAATTTGGAATCCATAAAAGCATCGAGCTTCCGGGATTTGAACCT 31304 Query 16569 C-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAAC 16627 | | | |||| | || || || ||||| || || || ||||| || ||||| || Sbjct 31305 CACTGCTGAAATTCAT-GGCGAGATTTTCATTAACAATCCCATCACTGGCTGCAAAGAAG 31363 Query 16628 GCCAATATGTGCTTAATGAAATATTTTTC---GTCAGATGTAAGAATATGCCAATCTTTT 16684 ||||| | ||| || || || | | | || ||| ||| | | || |||| || || Sbjct 31364 GCCAACACGTGTTTGATAAAGTGTCTCTCATTGTCCGAT---ATATTAAGCCAGTCATTC 31420 Query 16685 AAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATAC 16744 | || | | ||| | |||||||| ||||||||||| ||| |||| || |||||| Sbjct 31421 ATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCTTTCTTATAC 31480 Query 16745 ATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 || | |||||| ||| | |||||| ||||||| ||| Sbjct 31481 ATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGAC 31518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511390459413400