Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3629 226 3e-54 seq2423 219 5e-52 >seq3629 Length=149247 Score = 226 bits (250), Expect = 3e-54 Identities = 422/610 (69%), Gaps = 11/610 (2%) Strand=Plus/Plus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 |||||| |||||| || || || ||||| || || || | ||| || | || || |||| Sbjct 30930 ACATCAGACATGCAAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAA 30989 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 24245 | ||||| ||||| | || || || || ||||||||||| || ||| |||||||| Sbjct 30990 AGCAAAGTCCAGGCATCAATCCTCGTTTCTTCAGCCAAAATATAGA-GCAGAATGATCCG 31048 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG 24305 || || || |||||||| || ||||||||||| | | ||||||| || | ||| Sbjct 31049 GAGAAAAAGATTCCTTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATAC 31108 Query 24306 TCATGTATC-CACT-TTTGA--GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 24361 | || ||| ||| ||| | ||||| | || || || | || || || ||||| || Sbjct 31109 TT-TGGATCGCACCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTC 31167 Query 24362 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 24421 || || | | || | |||||| | |||||| | |||||||||||||| | Sbjct 31168 AATCGCGCATAGTAAATGCTGTTTTTCGGTTGGATCTTTGATGTATGTATCAATCAATAA 31227 Query 24422 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 24481 ||||| |||||| || || ||||| || || ||||| ||||| || || |||| ||| Sbjct 31228 CGAATACACTTCCGAGTGTATATTTTCTATTGCAATTTGGAATCCATAAAAGCATCGAGC 31287 Query 24482 CTCGGTAATCTGTACTTCTATAC--AAAATCGTTCTGCTAAATTTTCATTCACTATTCCG 24539 || | || || || || | | ||| || | || | ||||||||| || || || Sbjct 31288 TTCCGGGATTTGAACCTCACTGCTGAAATTCAT--GGCGAGATTTTCATTAACAATCCCA 31345 Query 24540 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT 24599 |||||||||||||| || ||||| || ||||| ||||| | | | || | | || Sbjct 31346 TCACTGGCTGCAAAGAAGGCCAACACGTGTTTGATAAAGTGTCTCTCATTGTCCGATATA 31405 Query 24600 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 24659 ||| ||| ||||| || || | | ||| | |||||| | |||||||| |||| Sbjct 31406 TTAAGCCAGTCATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCC 31465 Query 24660 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTA 24719 ||||| || |||||||| | ||| || ||| | ||| || ||||| | ||||| | Sbjct 31466 TCTGCTTTCTTATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCGG 31525 Query 24720 TTTGGATTTT 24729 || ||||||| Sbjct 31526 TTCGGATTTT 31535 >seq2423 Length=50609 Score = 219 bits (242), Expect = 5e-52 Identities = 1024/1619 (63%), Gaps = 14/1619 (1%) Strand=Plus/Minus Query 53445 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 53504 || |||| || ||||| || || | || || || || | || | ||| ||||||| Sbjct 20783 CGAAATACATCGTTTCAAAAATTTCTTTGTTGAGCTCGCGAGCAGCTTTGCTTTCAAATG 20724 Query 53505 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 53564 || | | | || | ||||| || || | |||||||| || || || || |||| || Sbjct 20723 GAAGACTCATCAGTAAAAACGTATCGGCAAGACCTTGAACGCCGATTCCAATCGGTCGAT 20664 Query 53565 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 53624 ||| || ||| | || ||||| ||||| ||||||||||| | ||| || ||||| | Sbjct 20663 GTCGCTGATTGCTCACTTGTGCTTCAGGAATCGGATAATAATTGAGATCAATGATTTTGT 20604 Query 53625 TGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCAT 53684 |||| ||| | || | ||| | || | | ||| ||| | ||||| | | Sbjct 20603 TGAGATTTTTCGTAACGATTTTTGTGATTTCGTATAATTTTGCAAACTGAAATTCTT--T 20546 Query 53685 CTATTACAAACATGTT--CAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGC 53742 || |||| | || || |||||| || || |||| ||| || || || || || || | Sbjct 20545 CTGATACACAAATTTTGACAATGCGATGGAAGCCAAATTGCATACTGCCACTTCTTTGGA 20486 Query 53743 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 53802 || | || | || || ||| ||| ||||| || | |||||||| | ||| || Sbjct 20485 GTCTGAGTACTCGATGATTTCACAGCAGAGATTGCTTGATCGAATGGTTCCAAGATTCTG 20426 Query 53803 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAAT 53862 ||||| || ||||| || || || ||||| || | ||||| || || ||||| Sbjct 20425 CTGATTGGATTTACGATTACAAGCGTCTTTGTAAAGCATATACGGCGTTCCGGTCTCAAT 20366 Query 53863 CTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT 53922 ||| || | ||| || ||| | | || || | | | | | || Sbjct 20365 CTGACTATCCAAAATGGCAAACCACAATTGCTGGGCTTTGACAGTCTTTCGGGCAATGTT 20306 Query 53923 TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCC 53982 || ||||| | ||| || ||||| ||| |||||| | | | || Sbjct 20305 TTGAGACTCGTACTTTTCATATAACGCATCAAATTCGCTTCCCCATGTCTCATAAAGTCG 20246 Query 53983 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 54042 ||| || | |||||| | || ||| ||| || || | ||| ||||||||||| Sbjct 20245 TGGAGCCTCGTTCGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACACGTTTCATAAA 20186 Query 54043 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 54102 ||||| || ||||||||||| ||||| ||||| | || ||| || ||||| Sbjct 20185 CAGATCGGGGATCCAAAGAGCATAAAATAAATCTCGTGCTCGATGGAGTTCATTTCCATG 20126 Query 54103 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGT 54162 |||||| || || || ||| | | ||||| | |||||| || || | || || | Sbjct 20125 ATTCTTACGTAGTTCCAGAAACTCAAAGATATCCGCATGCCAGGGCTCTAGATAAATTGC 20066 Query 54163 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 54222 | | || ||| || || || ||||| | ||||| ||| |||| ||| | || Sbjct 20065 AAAAGACCCTTTCCGCTTCCCACCACCTTGATCAACGTATCGAGCTGTGTCATTGAACAC 20006 Query 54223 TCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACT 54282 | | |||||||| ||| ||||| || ||||| |||||| ||||| || | Sbjct 20005 CCGAAGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAACTGTTGGT 19946 Query 54283 GGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCA 54342 || |||||||| ||| | || || || || ||| || || || | || || Sbjct 19945 GGAGCGAATATTGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATACACGCACA 19886 Query 54343 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 54402 | |||| | ||| || || ||||| || ||| |||||| |||| | ||||||||| Sbjct 19885 TTGTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATAGAAAACA 19826 Query 54403 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 54462 || | |||| | ||| ||||||||||| || | || |||| || |||||||| Sbjct 19825 CGACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCATGCGTAAA 19766 Query 54463 CCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAAT 54522 | |||| || | | | ||||| || | | | | || | || | || || || Sbjct 19765 GAACTTTTGTGACATGTGTTCATACGTTTCCAAAACGGCATCCAAATTCTCTTTGTGTAT 19706 Query 54523 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 54582 || || || || ||||||| ||| || || || | |||| | || || | Sbjct 19705 GCCGACAGCCACTCGCATTATCATATGTTGTGGGCGTTCACACACTTTTCCATTCACACG 19646 Query 54583 CAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 54642 || || || ||||| |||| ||||||||| |||||||||| ||| |||||||| || Sbjct 19645 CAACAGATACGATTTCTCCAGAGTTTTAAAGCCAAAATAGTCGTAATCAAAGTCTCTATC 19586 Query 54643 GTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT 54702 ||||| | || ||||| || || | | |||| | || ||| || | Sbjct 19585 ACCGATAATGGCGGAATTGAGAGCTTCTTTGTTCTCCATAAC-AATTCGATGCACATCGT 19527 Query 54703 TG--AAATAATCGGAGAATG---TTTCCCATTTTTAGGATTGACATAGTTAAATAAATCC 54757 || | |||| |||| | ||| ||| | || | || |||||| Sbjct 19526 TGGCGATTAAT-GGAGCGGGTACTTTGGTGGTTTCGTGCTTATTTTCGTAAAATAA---T 19471 Query 54758 TTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTA 54817 | || |||||| || | ||| ||||| | ||| |||| ||| || | || |||| | Sbjct 19470 TGAATGTTTTCACTGAAGACTTTGTTTGTATTTTTATGTAAATTGGAAATAGCAATTCGA 19411 Query 54818 GCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTC 54877 || || | ||| |||| ||||||||||| | || ||||| |||| |||| | Sbjct 19410 GCAGCCAATTTGGAGAAATCGGGATGTTGTGTGCTGCAGTAAGCTGCGGTTTCTGCTGCC 19351 Query 54878 AGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCT 54937 | ||||||||| || || || || ||| | || || || ||| || | Sbjct 19350 AATTCGTCCAATTCCGATGTGGTGACGCCCGGATACACGCCAGCAATCACTTTCTGAGAT 19291 Query 54938 ATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGAT 54997 |||| | ||||| | | || ||||||||| || || | |||| | || || | Sbjct 19290 ATTTGGACGGGATCAACGTATTCTGTGTTTAAGTTGTAGCAGAGTTTTGTGATTCGCGCA 19231 Query 54998 GTGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGACAAACATTTT 55056 |||||||| || || |||| ||| || ||| | ||||| |||||| ||||||| Sbjct 19230 GTGATTTTGTCGAATTTGACGACTTCTTTTCGTCCGTCACGTTTGATGACATACATTTT 19172 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/184 (71%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 52838 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTT 52897 || || |||||||||||||| || || ||||| ||||| |||| |||||||| Sbjct 21396 GTTCGGAGATAGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGAA 21337 Query 52898 GTTAGTTTGGAATAAC--TCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGA 52955 || ||||| | | || |||| || || || || ||||| | |||||||| ||| | Sbjct 21336 GTGAGTTT--ACTGACAGTCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAAA 21279 Query 52956 TGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAG 53015 || | ||||| | || |||||||| | | |||| |||||| |||||||||| | Sbjct 21278 TGTACGCTCCTCGATCGGCAGCCATGTCCAAAATCGCCTTTTGCTTGATTTCCCAAACTG 21219 Query 53016 TTTT 53019 |||| Sbjct 21218 TTTT 21215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593693806407600