Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq3502 123 4e-23 seq25 116 6e-21 seq821 109 8e-19 seq655 96.9 5e-15 >seq3502 Length=87171 Score = 123 bits (136), Expect = 4e-23 Identities = 273/406 (67%), Gaps = 5/406 (1%) Strand=Plus/Minus Query 205384 TGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTA 205443 ||||| | || ||||| |||| || || ||||| ||| || |||| | || | Sbjct 15303 TGATTCATGTAGATATGGGCATCTCCGATCACATGAACAAACTCGCCGGGTTGGAGATCA 15244 Query 205444 GTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCT 205503 || | ||||||||||| | ||||| | || ||||||| ||| ||||| || || Sbjct 15243 GTCACGTGTGCAATCATTTTTGTCAAAAGCGCGTAGCTAGCAATATTGAATGGAACGCCC 15184 Query 205504 AAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTACA 205563 | ||| |||||||| |||| || |||||||| |||| | ||| ||| || Sbjct 15183 AGACCAATATCAGCGGATCGCTGGTACATTTGGCATGATA---ATTCCCCATTTGCAACG 15127 Query 205564 TGAAATTGTACAAAACA-ATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATT 205622 | |||||| || | | |||||| || |||| |||| | | | ||| | ||||| Sbjct 15126 TAAAATTGG-CACATGAGATGACAGGGAGGTAATGCCATTTCGGCTAAATCGGTTGGATT 15068 Query 205623 CCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATATG 205682 ||| || | ||| || ||| || | | | | | | |||| | ||| | ||| | || Sbjct 15067 CCAAGCGGATAAGATGATACGTCGACAATTTTGGTCAGTTTTGAGTTTGTGTATCACATC 15008 Query 205683 TGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACC 205742 | | ||||||||| || || | |||| | || |||||| | || | ||||| Sbjct 15007 GGCGAGTTGATCAAAGCCCTGGCCGCTGTAATCCGCATGCATATCTGTGTAACTTGCACC 14948 Query 205743 AAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCT 205788 ||||||||||||||||| || || | ||| |||||||| |||||| Sbjct 14947 GAAATGACGCCATTGAAAGCCGTAGATTGGTCCTAAATCGCCTTCT 14902 >seq25 Length=104834 Score = 116 bits (128), Expect = 6e-21 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || || |||||||| || | || | ||| | Sbjct 78422 AATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTC 78363 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| | || ||| || || || |||||||| || || || || || Sbjct 78362 AGATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGACCA 78303 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || |||||||| || |||||| | || || | ||||| | | ||||| || Sbjct 78302 GCAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGAACGCTTGCGGATTACAA 78243 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || ||||||||||| ||||| ||||| ||||| | || ||||| || ||| || Sbjct 78242 CATCCAGAAAGAATCAACGTTGCACTTGGTGCTACGTCTTCGTGGTGGAATGCAAATTT 78184 Score = 114 bits (126), Expect = 2e-20 Identities = 170/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || ||||| || ||| | || || || || || || || || ||| | || |||| | Sbjct 78652 ACCATGCAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCT 78593 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 || || || |||| |||| || |||||||| |||||||| || || |||||| Sbjct 78592 TCAGACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGAT 78533 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || ||| | || || || || ||||||||| |||| || | || || | | ||||| Sbjct 78532 CAGCAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGTACTCTTGCGGATTAC 78473 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAAT 124775 || || || ||||||||||| ||||| ||||| ||||| | || ||||| || ||| | Sbjct 78472 AACATCCAGAAAGAATCAACGTTGCACTTGGTGCTACGTCTTCGTGGTGGAATGCAAATT 78413 Query 124776 T 124776 | Sbjct 78412 T 78412 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || || |||||||||||| | || | || || Sbjct 78194 AATGCAAATTTTTGTTAAGACGCTGACCGGGAAAACTATAACTCTGGAAGTCGAGTCATC 78135 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | || ||| || || || |||||||| || || || || || Sbjct 78134 TGACACTATTGACAATGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGACCA 78075 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || |||||||| || |||||| | || || | ||||| | | ||||| || Sbjct 78074 GCAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGAACGCTTGCGGATTACAA 78015 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTA 124767 ||||| ||||| || || | ||| |||| | ||| | || ||||||| Sbjct 78014 CATTCAGAAAGAGTCTACGCTTCATCTGGTGCTTCGTCTTCGTGGTGGTA 77965 >seq821 Length=42298 Score = 109 bits (120), Expect = 8e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 124640 AGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCG 124699 |||||| || || || ||||| | || |||||||| || |||||||| || ||| |||| Sbjct 35873 AGGTATTCCCCCGGACCAACAGCGTCTCATTTTTGCTGGGAAACAATTGGAAGATGGTCG 35932 Query 124700 AACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACG 124759 |||||||| ||||| || ||||| |||||| || || ||| ||||| |||| ||||| Sbjct 35933 AACATTAGCGGATTACAACATTCAGAAAGAAAGCACGTTACATCTGGTTCTACGATTACG 35992 Query 124760 AGGTGGTATTAAAAA 124774 |||||| ||| || Sbjct 35993 CGGTGGTGGTAAGAA 36007 >seq655 Length=45005 Score = 96.9 bits (106), Expect = 5e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | || ||||| || || ||||| || ||| | ||| | ||| || Sbjct 27605 AATGCAGATTTTCGTCAAAACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATC 27546 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || |||| | || ||| |||||||| || ||||| || || || || || Sbjct 27545 CGACACCATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCA 27486 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | ||||| |||||||||||||| ||||| | ||||| | | ||||| || Sbjct 27485 ACAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCTCGCGGATTACAA 27426 Query 124718 TATTCAAAAAG 124728 || ||||||| Sbjct 27425 CATCCAAAAAG 27415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755420635216000