Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq25 113 4e-20 seq655 104 2e-17 >seq25 Length=104834 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || || ||||| || ||||||||||| | ||| || || || Sbjct 78440 CACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGAGTACGTCCGTCTTC 78499 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || |||||||||||| |||| ||||| |||||||| ||||| || || || |||||| Sbjct 78500 TAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTG 78559 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| ||||| | ||| || || | || | || || Sbjct 78560 AATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAAAGTGATGGTCTT 78619 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 || || || ||||| |||||||||||||||| Sbjct 78620 TCCAGTAAGCGTTTTCACAAAAATCTGCATGG 78651 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCC 118586 ||||| || | ||||||||||| |||||||||||||| | || || | ||| || Sbjct 77984 CACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATC-CGCA-AGCGTTCGTCCGTCT 78041 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || || ||||| || || | || ||||| ||||| || ||||| || || || ||||| Sbjct 78042 TCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCC 78101 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 || || || || | || | ||||| | |||||| || | || | ||| Sbjct 78102 TGGATCTTCGCCTTCACATTGTCAATAGTGTCAGATGACTCGACTTCCAGAGTTATAGTT 78161 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||||||| || || |||||||| ||||| Sbjct 78162 TTCCCGGTCAGCGTCTTAACAAAAATTTGCAT 78193 >seq655 Length=45005 Score = 104 bits (114), Expect = 2e-17 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 ||||||| ||||||||||| | || || ||||| | |||||||| ||| | | Sbjct 27415 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 27474 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 | | |||||| || |||||||| || || ||||||||| ||| || || || | | Sbjct 27475 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 27534 Query 118669 CGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 118727 ||| |||||| | || | |||||||| | || | ||||| ||||| || ||||| || Sbjct 27535 CGATGGTGTCGGATGAT-TCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTTTTGACG 27593 Query 118728 AAAATCTGCAT 118738 ||||||||||| Sbjct 27594 AAAATCTGCAT 27604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433810599031540