Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3629 205 9e-48 >seq3629 Length=149247 Score = 205 bits (226), Expect = 9e-48 Identities = 566/858 (66%), Gaps = 30/858 (3%) Strand=Plus/Plus Query 15949 ATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCAT 16008 |||||| | ||| | || ||||| || ||||||||||||| | ||||| | ||||| Sbjct 30652 ATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAATCATATCCAT 30711 Query 16009 AAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC--ATCCCAATTCCAAC-AATAA 16065 | ||||| ||||| ||| | ||| | || | |||| | || || || Sbjct 30712 CCAGTCAAAGGGATTA---GAAGCGTGATATAACTTGCTGACGCCAAGTGCATGTAACAA 30768 Query 16066 TCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 16125 || |||||||||||| || || || || ||| ||| | |||||||| |||| | Sbjct 30769 TCGATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCTC 30828 Query 16126 AACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTC---AATGATTAT 16182 || || | || ||| || ||| | || ||| || |||| || || ||||||| Sbjct 30829 GACTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAATGATTGC 30888 Query 16183 ATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAA---CATTATACAAGC 16239 || | || | || ||| | || || |||| | ||| | ||| || Sbjct 30889 ATG----AATAGAGCCTTCT--GGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGC 30942 Query 16240 AAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGG 16299 ||| |||||||| | |||||| || | ||| || | ||| |||||||| ||| || || Sbjct 30943 AAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGG 31002 Query 16300 CATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACC 16359 ||| | ||||||||| || | ||||||||||| | ||||| || || || || || || Sbjct 31003 CATCAATCCTCGTTTCTTCAGCCAAAATATAGAGCAGAATGATCCGGAGAAAAAGATTCC 31062 Query 16360 TTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatc-- 16417 ||| || || ||||| || |||| || || | ||| || ||||| ||| Sbjct 31063 TTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCAT----ACTTTGGATCGC 31118 Query 16418 --cattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAA 16475 ||||| ||||| | |||||| | |||| || || | || || || | Sbjct 31119 ACCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCATA 31178 Query 16476 ATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTT 16535 ||||| | |||||| | |||| || || ||||| || | ||| ||||| || Sbjct 31179 GTAAATGCTGTTTTTCGGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTT 31238 Query 16536 CTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTT 16595 | || || ||||| || ||||| || || || ||||||||||||| |||||| | |||| Sbjct 31239 CCGAGTGTATATTTTCTATTGCAATTTGGAATCCATAAAAGCATCGAGCTTCCGGGATTT 31298 Query 16596 GTACTTCAGAG-TAAAACCTTTCT-GCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGC 16653 | || ||| | | ||| || | || | ||||| ||||| || ||||| || ||||| Sbjct 31299 GAACCTCACTGCTGAAA--TTCATGGCGAGATTTTCATTAACAATCCCATCACTGGCTGC 31356 Query 16654 AAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTC 16713 ||| || || | | |||||| ||||| | | | || || || || | || | |||||| Sbjct 31357 AAAGAAGGCCAACACGTGTTTGATAAAGTGTCTCTCATTGTCCGATATATTAAGCCAGTC 31416 Query 16714 AGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTT 16773 | | || | ||||||| |||||| | |||||||| || | || || || Sbjct 31417 ATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCTTTCTT 31476 Query 16774 ATACATTTTCCATATGTC 16791 |||||| | ||| || || Sbjct 31477 ATACATGTCCCAAATCTC 31494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462490348657000