Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2423 212 6e-50 seq3629 185 8e-42 seq25 111 1e-19 seq655 87.8 2e-12 >seq2423 Length=50609 Score = 212 bits (234), Expect = 6e-50 Identities = 1170/1853 (63%), Gaps = 45/1853 (2%) Strand=Plus/Minus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 || || ||||| ||||| || ||||| ||||| | ||||| ||||| ||||| ||||| Sbjct 21396 GTTCGGAGATAGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGAA 21337 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | ||| | | |||| | | |||| | ||| | || ||||||||| || Sbjct 21336 GTGAGTTTACTGACAGTCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAAATG 21277 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCAT----CGACATTTCCCATAC 22320 |||||||||||||||| ||||| | | ||| ||| | | |||||||| || Sbjct 21276 TACGCTCCTCGATCGGCAGCCATGTCCA-AAAT---CGCCTTTTGCTTGATTTCCCAAAC 21221 Query 22321 GGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTT 22380 || |||||| || | | | | || || |||| | || ||||| ||| Sbjct 21220 TGTTTTGTACTTTTCTTTCACATGAGAAGGAATTTCAGCGATATTTTGTACGGAACCGCG 21161 Query 22381 ATTGTGTATGATCAAATTTTTAATCGTATCGT-TCCACAAACCGATGGCGGTCAAATCTT 22439 || | | | ||| ||| || ||| | | |||||||| || | | | |||| Sbjct 21160 ATCGCGAAGGATTTGATTCCGAA-CGTCTGATGTCCACAAATTCATCTCAATAAGCTCTT 21102 Query 22440 TGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGT 22499 | |||| ||| || | | ||| || || | | |||||| || | | | |||| Sbjct 21101 CCATGAGATATTTGTTGACAATTGTAAATTCTCCAGCGAGGACGCGTCGATTGAACATGT 21042 Query 22500 TGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCG 22559 |||| |||||||| |||| ||| || || || || || ||||| || || ||||| | Sbjct 21041 TGGAAGTGAACGGCTCGATAGACTCGCAATTGCCGAGAATTTGAGCCGTTGAGGCGGTTG 20982 Query 22560 GCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTC-TTGAGC 22618 ||||||| || | ||| | ||||||| | ||||| | | | || ||| || | | Sbjct 20981 GCATCGGAGCGAGCAGCAAAGAGTTTCGGATTCCGTGAGTAGCTA-CTTGCTCTTTCAAC 20923 Query 22619 ATCGACCAGTCCCACAGATCGGA---CGGCGTCACATTGTCCCACATATCGTATTGCAAC 22675 | ||| ||||| || |||| || | || | ||||||||| |||| || Sbjct 20922 TGCTTCCAATCCCATCGACCGGAATCGGGAATGAC---CTGCCACATATCAAATTGAAAG 20866 Query 22676 ACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCG-GCAAG 22734 | || ||||| | || || | || | |||||||| || | || || || | Sbjct 20865 ATACCTCGACTAACTGGTGATCCAGCATAGCTCTCGTACGGTCC-GAGTTCCCGTGCCAA 20807 Query 22735 TTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTC 22794 ||| | || |||| ||| || |||| || || || || |||| ||||| | || Sbjct 20806 TTCCATGGAAGCTTCCATCGCCGCGAAATACATCGTTTCAAAAATTTCTTTGTTGAGCTC 20747 Query 22795 GGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTG 22854 | || || |||||| | || | || ||||| | |||| || || | ||| || Sbjct 20746 GCGAGCAGCTTTGCTTTCAAATGGAAGACTCATCAGTAAAAACGTATCGGCAAGACCTTG 20687 Query 22855 AACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATA 22914 |||||| || || |||||||| | | | |||| ||||| ||| || || | ||||| Sbjct 20686 AACGCCGATTCCAATCGGTCGATGTCGCTGATTGCTCACTTGTGCTTCAGGAATCGGATA 20627 Query 22915 CCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNN 22974 |||| ||| || || |||| | ||| | || || ||||| || || Sbjct 20626 ATAATTGAGATCAATGATTTTGTTGAGATTTTTCGTAACGATTTTTGTGATTTCGTATAA 20567 Query 22975 NNNNTCAAAGTCGTAAACGCCCGATTGTACAACAAACTTGTTGAC--GGCGATCGAGGCA 23032 |||| | ||| | | ||| ||||| | ||||| ||||| || || Sbjct 20566 TTTTGCAAA--CTGAAATTCTTTCTGATAC-ACAAA--TTTTGACAATGCGATGGAAGCC 20512 Query 23033 AGATTGCATACGGCCACCTCGTCTTTGGA---CGTGTACTCTACAATTTCGGTACATAGA 23089 | ||||||||| |||| | |||||||| | |||||| | ||||| || ||| Sbjct 20511 AAATTGCATACTGCCA---CTTCTTTGGAGTCTGAGTACTCGATGATTTCACAGCAGAGA 20455 Query 23090 TTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTG 23149 ||||| | || || || | ||| ||| ||| ||| ||||| || | || ||| Sbjct 20454 TTGCTTGATCGAATGGTTCCAAGATTCTGCTGATTGGATTTACGATTACAAGCGTCTTTG 20395 Query 23150 TAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTC 23209 || ||||| |||||||| || ||||| | ||| || | || || ||||| | Sbjct 20394 TAAAGCATATACGGCGTTCCGGTCTCAATCTGACTATCCAAAATGGCAAACCACAATTGC 20335 Query 23210 TGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTC 23268 || || | ||| ||| || | || || ||||||||||| || ||||| || Sbjct 20334 TGGGCTTTGACA-GTCTTTCGGGCAATGTTTTGAGACTCGTACTTTTCATATAACGCATC 20276 Query 23269 AAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCA 23328 ||||||| || | || || | || | | ||||||| | | |||||| Sbjct 20275 AAATTCGCTTCCCCATGTCTCATAAAGTCGTGGAGCCTCGTTCGGACAGAATAAACTCCA 20216 Query 23329 CATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAG 23388 | || | ||| || ||| ||||||| ||||| || ||||| ||||| || || | Sbjct 20215 TTCTTGGTTGTCTTCCACACGTTTCATAAACAGATCGGGGATCCAAAGAGCATAAAATAA 20156 Query 23389 TTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACAC 23448 || || || || || || || ||||| | |||| ||| || || | Sbjct 20155 ATCTCGTGCTCGATGGAGTTCATTTCCATGATTCTTACGTAGTTCCAGAAACTCAAAGAT 20096 Query 23449 GTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTG 23508 ||||||||||| ||||| || |||| ||||| | || | ||| || || || Sbjct 20095 ATCCGCATGCCAGGGCTCTAGATAAATTGCAAAAGACCCTTTCCGCTTCCCACCACCTTG 20036 Query 23509 ATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGC 23568 ||| ||||| || || |||| ||| |||| | ||||| || || | || || || Sbjct 20035 ATCAACGTATCGAGCTGTGTCATTGAACACCCGAAGCATTGGAACAATTCCATTCGAACT 19976 Query 23569 GCCGCCTACG-CCCGCCACACTCGAACCTTTTGCT----CGAACGTTGTGAACGTGGAAA 23623 | | | || ||||| | | | || ||| | |||| ||| || || Sbjct 19975 TC--CATTCGTCCCGCGAATAT---AACTGTTGGTGGAGCGAATATTGGAAATACTGACG 19921 Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCC 23683 || || || || || | || || || ||| ||||||||||| |||||||| ||||| Sbjct 19920 CCAATACCGCCAGCCCACTTTGAAATACACGCACATTGTTTCAGCGTGTCGTAAATGCCG 19861 Query 23684 TCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTA 23743 ||||| || |||| | | | | |||||||| || | ||| | | ||||| Sbjct 19860 TCGATAGAATCATCTTGCATGGATAATAGAAAACACGACGATAATTGGGGTCGAGGCGTT 19801 Query 23744 GCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTAC 23803 | || ||| || ||||| | || ||||||||| | | ||||| | | ||| Sbjct 19800 CCCGCATTGAAAAGCGTCGGAGTTGCATGCGTAAAGAACTTTTGTGACATGTGTTCATAC 19741 Query 23804 GTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATG 23863 || || | ||||||| | | |||| |||||| |||| || || ||||| ||||| Sbjct 19740 GTTTCCAAAACGGCATCCAAATTCTCTTTGTGTATGCCGACAGCCACTCGCATTATCATA 19681 Query 23864 TATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTT 23923 | ||| || | || | || || | |||||||| || | || ||| Sbjct 19680 TGTTGTGGGCGTTCACACACTTTTCCATTCACACGCAACAGATACGATTTCTCCAGAGTT 19621 Query 23924 TTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 ||||| ||||||||||| || | |||||| | ||| | ||||| ||||| Sbjct 19620 TTAAAGCCAAAATAGTCGTAATCAAAGTCTCTATCACCGATAATGGCGGAATT 19568 >seq3629 Length=149247 Score = 185 bits (204), Expect = 8e-42 Identities = 593/896 (66%), Gaps = 52/896 (6%) Strand=Plus/Minus Query 57540 TTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCA 57599 |||||| | |||||||| || | | || |||||| ||||||| || || ||||| ||| Sbjct 31521 TTTGTCTTATTTCCGATACAACAATCTGAGATTTGGGACATGTATAAGAAAGCAGAGGCA 31462 Query 57600 TCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGAT--TCCC 57657 |||||||||| |||||| | || || | || ||| || ||| | | Sbjct 31461 AGCTTTTGGACCGCAGAAGAAATCGATTTGGTGCATGACATGAATGACTGGCTTAATATA 31402 Query 57658 TCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATG 57717 || | ||| |||||| | ||||| |||||||||||||| || || || || |||| Sbjct 31401 TCGGACAAT--GAGAGACACTTTATCAAACACGTGTTGGCCTTCTTTGCAGCCAGTGATG 31344 Query 57718 GTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA-CA-AGAAGTGCAAGTGACGGAGGC 57775 | |||||||| || ||| | | | | || ||||| || || || ||| | |||| || Sbjct 31343 GGATTGTTAATGAAAATCTCGCC--ATGAATTTCAGCAGTGAGGTTCAAATCCCGGAAGC 31286 Query 57776 GAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCT 57835 |||||||||| ||||| ||| | || || ||||| | || || ||| |||||||| | Sbjct 31285 TCGATGCTTTTATGGATTCCAAATTGCAATAGAAAATATACACTCGGAAGTGTATTCGTT 31226 Query 57836 ACTCATCGATACGTACGTGAAGGA--CAACGACGAGAAACGTAGACTGTTCAA--CGCGA 57891 | | || ||||| ||| | || || |||| ||| |||| || | | | | ||||| Sbjct 31225 ATTGATTGATACATACATCAAAGATCCAAC--CGAAAAAC--AGCATTTACTATGCGCGA 31170 Query 57892 TCGAAACAATGCCCGCG-ATCGCCAAGAAGGCAGAGTGGTCAATCAAATG----GATAAA 57946 | |||||||| |||| | | |||| || ||| | ||| | | ||||| ||| | Sbjct 31169 TTGAAACAAT-CCCGTGCGTTACCAATAAAGCACAATGGGCGTTGAAATGGTGCGATCCA 31111 Query 57947 AAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATT 58006 ||| ||| |||| || || || | | || || || ||||||||||| || || Sbjct 31110 AAG----TATGCCTCGTTTGCAGAAAGAGTGGTAGCCTTTGCGGCCGTCGAAGGAATCTT 31055 Query 58007 CTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCC 58065 || || || || ||| | ||||||||| |||||||||| || ||||||| || | Sbjct 31054 TTTCTCCGGATCATTCTGC-TCTATATTTTGGCTGAAGAAACGAGGATTGATGCCTGGAC 30996 Query 58066 TGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCC 58125 | ||| || ||| | || || || || || || ||| ||| ||||| || | Sbjct 30995 TTTGCTTTTCAAATGAGCTCATCAGTCGTGATGAAGGACTACATTGTGACTTTGCATGTC 30936 Query 58126 TAATGTACTCTCACATTGTCAATAAACCGAC-GCGGGATCGCATCTTGGACATTATCACC 58184 | |||||||| | | || ||||| | | | || || || || | || || || Sbjct 30935 TGATGTACTCGAAACTGGTAAATAAGCTTCCAGAAGGCTCTATTCATGCA-ATCATTTCC 30877 Query 58185 GAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGT 58244 || || || |||||| | || ||||| || | || || || | | | || Sbjct 30876 GACGCCGTTATCATCGAACAAGAATTTGTACGAGATTCACTTCCAGTCGAGCTAATTGGA 30817 Query 58245 ATGAA--CAATGATTTGAT--GTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCT 58300 ||||| ||| |||||| ||||| ||||| |||||||| || || || | || | Sbjct 30816 ATGAATTCAA--GTTTGATGGGTCAA--TACATCGAGTTTGTGGCGGATCGATTGTTACA 30761 Query 58301 CGAACTGATTGGAGAGCGTCA-----TTACAACACG--AAAAATCCGTTTGATTTTATGA 58353 | || ||| |||||| ||| | |||| ||||| ||||| | ||| Sbjct 30760 TGCAC---TTG----GCGTCAGCAAGTTATATCACGCTTCTAATCCCTTTGACTGGATGG 30708 Query 58354 ATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATAT 58409 || |||| || || | || || ||||||||||| || ||| ||| | |||||| Sbjct 30707 ATATGATTTCTCTGCAAGGAAAAACAAACTTTTTTGAGAAACGCGTTGGAGAATAT 30652 >seq25 Length=104834 Score = 111 bits (122), Expect = 1e-19 Identities = 166/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| ||||| || ||||| || || | || || || | || Sbjct 78193 ATGCAAATTTTTGTTAAGACGCTGACCGGGAAAACTATAACTCTGGAAGTCGAGTCATCT 78134 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || || || || |||||| ||||| | || || |||||| Sbjct 78133 GACACTATTGACAATGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGACCAG 78074 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGCGATTATA 31370 || |||||||| || || || ||||| |||||||| | | || || | ||||| | Sbjct 78073 CAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGAACGCT-TGCG-GATTACA 78016 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTAG 31422 ||||||| ||||| || || ||||||||||| ||| | || | || ||||| Sbjct 78015 ACATTCAGAAAGAGTCTACGCTTCATCTGGTGCTTCGTCTTCGTGGTGGTAG 77964 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| ||||| || ||||| || || | || || ||| | || Sbjct 78421 ATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTCA 78362 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | || || || || |||||| ||||| | || || |||||| Sbjct 78361 GATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGACCAG 78302 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGCGATTATA 31370 || |||||||| || || || ||||| |||||||| | | || || | ||||| | Sbjct 78301 CAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGAACGCT-TGCG-GATTACA 78244 Query 31371 ACATTCAAAAAGAATCGAC 31389 |||| || |||||||| || Sbjct 78243 ACATCCAGAAAGAATCAAC 78225 >seq655 Length=45005 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || || || || || ||||| ||||| | || || ||| | ||| Sbjct 27604 ATGCAGATTTTCGTCAAAACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATCC 27545 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||||||||||| | || |||||||| Sbjct 27544 GACACCATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCAA 27485 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||| | || ||||| || ||||| ||||| ||| Sbjct 27484 CAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGAC 27449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445745532560400