Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq3629 239 4e-58 >seq3629 Length=149247 Score = 239 bits (264), Expect = 4e-58 Identities = 400/572 (70%), Gaps = 15/572 (3%) Strand=Plus/Plus Query 11622 ACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAA 11681 |||| | ||| ||||| |||||||||| ||||| || | ||| || || ||||| |||| Sbjct 30930 ACATCAGACATGCAAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAA 30989 Query 11682 ATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCA-AATGAACCA 11740 | | ||| ||||||||||||||||| || | ||||||||||| |||| ||||| || Sbjct 30990 AGCAAAGTCCAGGCATCAATCCTCGTTTCTTCAGCCAAAATATAG-AGCAGAATGATCCG 31048 Query 11741 GAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCA-------TATAC 11793 || || || ||||| || || || ||||| ||||| ||||||||| || |||| Sbjct 31049 GAGAAAAAGATTCCTTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATAC 31108 Query 11794 CTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGT 11853 ||| | | | |||||| ||||| | ||||| || | ||||| ||||| Sbjct 31109 TTTG--GATCG--CACCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGT 31164 Query 11854 TTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAA 11913 ||| || ||| | ||||||| |||||| | |||| | | |||||||| || || Sbjct 31165 TTCAATCGCGCATAGTAAATGCTGTTTTTCGGTTGGATCTTTGATGTATGTATCAATCAA 31224 Query 11914 TAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCG 11973 ||| ||||| ||| || || |||||||| || || ||||| |||||||| || ||||| Sbjct 31225 TAACGAATACACTTCCGAGTGTATATTTTCTATTGCAATTTGGAATCCATAAAAGCATCG 31284 Query 11974 TGCCTCTGAACACTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATAC 12032 || || | || || || | | |||| | || | ||| ||||| ||||| | Sbjct 31285 AGCTTCCGGGATTTGAACCTCACTGCTGAAAT-TCATGGCGAGATTTTCATTAACAATCC 31343 Query 12033 CATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTA 12092 ||||||| | |||||| || || | | ||||| ||||||| | | || | | | || Sbjct 31344 CATCACTGGCTGCAAAGAAGGCCAACACGTGTTTGATAAAGTGTCTCTCATTGTCCGATA 31403 Query 12093 ATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTG 12152 ||| ||| |||| | || | ||||| | |||||| |||||||||| |||| Sbjct 31404 TATTAAGCCAGTCATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTG 31463 Query 12153 CCACTGATTGTTTATACATTTTCCAGATATCA 12184 || ||| || |||||||| | ||| || ||| Sbjct 31464 CCTCTGCTTTCTTATACATGTCCCAAATCTCA 31495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468502867182800