Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3629 226 4e-54 seq2423 219 6e-52 >seq3629 Length=149247 Score = 226 bits (250), Expect = 4e-54 Identities = 422/610 (69%), Gaps = 11/610 (2%) Strand=Plus/Plus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 |||||| |||||| || || || ||||| || || || | ||| || | || || |||| Sbjct 30930 ACATCAGACATGCAAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAA 30989 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 36268 | ||||| ||||| | || || || || ||||||||||| || ||| |||||||| Sbjct 30990 AGCAAAGTCCAGGCATCAATCCTCGTTTCTTCAGCCAAAATATAGA-GCAGAATGATCCG 31048 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 36328 || || || |||||||| || ||||||||||| | | ||| ||| || | |||| Sbjct 31049 GAGAAAAAGATTCCTTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATAC 31108 Query 36329 TCATGTATC-CACT-TTTGA--GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 36384 | || ||| ||| ||| | ||||| | || || || | || || || ||||| || Sbjct 31109 TT-TGGATCGCACCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTC 31167 Query 36385 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 36444 || || | | || | |||||| | |||||| | |||||||||||||| | Sbjct 31168 AATCGCGCATAGTAAATGCTGTTTTTCGGTTGGATCTTTGATGTATGTATCAATCAATAA 31227 Query 36445 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 36504 ||||| |||||| || || ||||| || || ||||| ||||| || || |||| ||| Sbjct 31228 CGAATACACTTCCGAGTGTATATTTTCTATTGCAATTTGGAATCCATAAAAGCATCGAGC 31287 Query 36505 CTCGGTAATCTGTACTTCTGTAC--AAAATCGTTCTGCTAAATTTTCATTCACTATTCCG 36562 || | || || || || | | ||| || | || | ||||||||| || || || Sbjct 31288 TTCCGGGATTTGAACCTCACTGCTGAAATTCATG--GCGAGATTTTCATTAACAATCCCA 31345 Query 36563 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGT 36622 |||||||||||||| || ||||| || ||||| ||||| | | | || || | || Sbjct 31346 TCACTGGCTGCAAAGAAGGCCAACACGTGTTTGATAAAGTGTCTCTCATTGTCCGATATA 31405 Query 36623 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 36682 ||| ||| ||||| || || | | ||| | |||||| | |||||||| |||| Sbjct 31406 TTAAGCCAGTCATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCC 31465 Query 36683 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTA 36742 ||||| || |||||||| | ||| || ||| | ||| || ||||| | ||||| | Sbjct 31466 TCTGCTTTCTTATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCGG 31525 Query 36743 TTTTGATTTT 36752 || |||||| Sbjct 31526 TTCGGATTTT 31535 >seq2423 Length=50609 Score = 219 bits (242), Expect = 6e-52 Identities = 1029/1623 (63%), Gaps = 22/1623 (1%) Strand=Plus/Minus Query 65476 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 65535 || |||| || ||||| || || | || || || || | || | ||| ||||||| Sbjct 20783 CGAAATACATCGTTTCAAAAATTTCTTTGTTGAGCTCGCGAGCAGCTTTGCTTTCAAATG 20724 Query 65536 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 65595 || | | | || | ||||| || || | |||||||| || || || || |||| || Sbjct 20723 GAAGACTCATCAGTAAAAACGTATCGGCAAGACCTTGAACGCCGATTCCAATCGGTCGAT 20664 Query 65596 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 65655 ||| || ||| | || ||||| ||||| ||||||||||| | ||| || ||||| | Sbjct 20663 GTCGCTGATTGCTCACTTGTGCTTCAGGAATCGGATAATAATTGAGATCAATGATTTTGT 20604 Query 65656 TGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCAT 65715 |||||||| | || | ||| | || | | ||| ||| | |||| | | Sbjct 20603 TGAGATTTTTCGTAACGATTTTTGTGATTTCGTATAATTTTGCAAACTGAAATTCTT--T 20546 Query 65716 CTATTACAAACATGTT--CAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGC 65773 || |||| | || || |||||| | || |||| ||| || || || || || || | Sbjct 20545 CTGATACACAAATTTTGACAATGCGATGGAAGCCAAATTGCATACTGCCACTTCTTTGGA 20486 Query 65774 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 65833 || | || | || || ||| ||| ||||| || | |||||||| | ||| || Sbjct 20485 GTCTGAGTACTCGATGATTTCACAGCAGAGATTGCTTGATCGAATGGTTCCAAGATTCTG 20426 Query 65834 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAAT 65893 ||||| || ||||| || || || ||||| || | || || || || ||||| Sbjct 20425 CTGATTGGATTTACGATTACAAGCGTCTTTGTAAAGCATATACGGCGTTCCGGTCTCAAT 20366 Query 65894 CTGAGATTCTATAATCGCTTTCCAGACGACT-CGAGCCTTTATTATAGATTT---GTATC 65949 |||| || | ||| || ||| | | | | | |||| | || || | Sbjct 20365 CTGACTATCCAAAATGGCAAACCACA--ATTGCTGGGCTTTG--ACAGTCTTTCGGGCAA 20310 Query 65950 TCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCA 66009 | |||| ||||| | ||| || || || ||| |||||| | | | Sbjct 20309 TGTTTTGAGACTCGTACTTTTCATATAACGCATCAAATTCGCTTCCCCATGTCTCATAAA 20250 Query 66010 ATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 66069 || ||| || | |||||| | || ||| ||| || || | ||| ||||||| Sbjct 20249 GTCGTGGAGCCTCGTTCGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACACGTTTCA 20190 Query 66070 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTC 66129 |||| ||||| || ||||||||||| ||||||||||| | || ||| || |||| Sbjct 20189 TAAACAGATCGGGGATCCAAAGAGCATAAAATAAATCTCGTGCTCGATGGAGTTCATTTC 20130 Query 66130 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATA 66189 | |||||| || || || ||| | | ||||| |||||| || || | || | Sbjct 20129 CATGATTCTTACGTAGTTCCAGAAACTCAAAGATATCCGCATGCCAGGGCTCTAGATAAA 20070 Query 66190 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 66249 | || | | || ||| || || || ||||| | ||||| ||| |||| ||| Sbjct 20069 TTGCAAAAGACCCTTTCCGCTTCCCACCACCTTGATCAACGTATCGAGCTGTGTCATTGA 20010 Query 66250 AAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTC 66309 | || | | |||||||| ||| ||||| || | ||||| |||||| ||||| || Sbjct 20009 ACACCCGAAGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAACTGT 19950 Query 66310 CACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 66369 | | |||||||| ||| | || || || || ||| || || || | | Sbjct 19949 TGGTGGAGCGAATATTGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATACACG 19890 Query 66370 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 66429 | ||| |||| | ||| || || ||||| || ||| |||||| |||| | ||||| Sbjct 19889 CACATTGTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATAGAA 19830 Query 66430 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 66489 |||| || | |||| | ||| ||||||||||| || | || |||| || |||| Sbjct 19829 AACACGACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCATGCG 19770 Query 66490 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 66549 |||| | |||| || | | | ||||| || | | | | || | || | || | Sbjct 19769 TAAAGAACTTTTGTGACATGTGTTCATACGTTTCCAAAACGGCATCCAAATTCTCTTTGT 19710 Query 66550 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 66609 | || || || || || ||||||| ||| || || || | |||| | || || | Sbjct 19709 GTATGCCGACAGCCACTCGCATTATCATATGTTGTGGGCGTTCACACACTTTTCCATTCA 19650 Query 66610 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 66669 ||||| || ||||| |||| ||||||||| |||||||||| ||| |||||||| Sbjct 19649 CACGCAACAGATACGATTTCTCCAGAGTTTTAAAGCCAAAATAGTCGTAATCAAAGTCTC 19590 Query 66670 GTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAA 66729 || ||||| | || ||||| || || | | |||| | || ||| | Sbjct 19589 TATCACCGATAATGGCGGAATTGAGAGCTTCTTTGTTCTCCATAAC-AATTCGATGCACA 19531 Query 66730 TACTTG--AAATAATCGGAGAATG---TTTCCCATTTTTAGGATTGACATAGTTGAATAA 66784 | ||| | |||| |||| | ||| ||| | || | || ||||| Sbjct 19530 TCGTTGGCGATTAAT-GGAGCGGGTACTTTGGTGGTTTCGTGCTTATTTTCGTAAAATAA 19472 Query 66785 ATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTAT 66844 | || |||||| || | ||| ||||| | ||| |||| ||| || | || || Sbjct 19471 ---TTGAATGTTTTCACTGAAGACTTTGTTTGTATTTTTATGTAAATTGGAAATAGCAAT 19415 Query 66845 TCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGC 66904 || ||| || | ||| |||| ||||||||||| | || ||||| |||| || Sbjct 19414 TCGAGCAGCCAATTTGGAGAAATCGGGATGTTGTGTGCTGCAGTAAGCTGCGGTTTCTGC 19355 Query 66905 TGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||||| ||||||||| || || || || ||| | || || || ||| Sbjct 19354 TGCCAATTCGTCCAATTCCGATGTGGTGACGCCCGGATACACGCCAGCAATCACTTTCTG 19295 Query 66965 AGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACG 67024 || ||||| | ||||| | | || ||||||||| || || | |||| | || || Sbjct 19294 AGATATTTGGACGGGATCAACGTATTCTGTGTTTAAGTTGTAGCAGAGTTTTGTGATTCG 19235 Query 67025 AGATGTGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGACAAACAT 67084 | |||||||| || || |||| ||| || ||| | ||||| |||||| |||| Sbjct 19234 CGCAGTGATTTTGTCGAATTTGACGACTTCTTTTCGTCCGTCACGTTTGATGACATACAT 19175 Query 67085 TTT 67087 ||| Sbjct 19174 TTT 19172 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/184 (71%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 64869 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 64928 || || |||||||||||||| || || ||||| ||||| |||| |||||||| Sbjct 21396 GTTCGGAGATAGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGAA 21337 Query 64929 GTTAGTTTGGAATAAC--TCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGA 64986 || ||||| | | || |||| || || || || ||||| | |||||||| ||| | Sbjct 21336 GTGAGTTT--ACTGACAGTCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAAA 21279 Query 64987 TGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAG 65046 || | ||||| | || |||||||| | | |||| |||||| |||||||||| | Sbjct 21278 TGTACGCTCCTCGATCGGCAGCCATGTCCAAAATCGCCTTTTGCTTGATTTCCCAAACTG 21219 Query 65047 TTTT 65050 |||| Sbjct 21218 TTTT 21215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658141989285800