Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq3629 257 2e-63 >seq3629 Length=149247 Score = 257 bits (284), Expect = 2e-63 Identities = 523/760 (69%), Gaps = 25/760 (3%) Strand=Plus/Plus Query 13586 ATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13645 |||||| | ||| | ||| ||||| ||||| ||||| |||| ||| || || | ||||| Sbjct 30652 ATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAATCATATCCAT 30711 Query 13646 AAAATCAAATGGATTT--ATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 13703 | ||||| ||||| | | ||| | |||| | || || ||| | || ||| Sbjct 30712 CCAGTCAAAGGGATTAGAAGCGTGATATA-ACTTGCTGACG-CCAAGTGCATGTAACAAT 30769 Query 13704 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13763 | ||| || | |||||| || |||||| ||| ||| ||||||| || ||||| | Sbjct 30770 CGATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCTCG 30829 Query 13764 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATT 13823 || |||| | || || |||||||| ||| || || || || ||| ||| Sbjct 30830 ACTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGA---AATGATT 30886 Query 13824 GTAATAATCT--CATTAGAAGGAGGATATTTTAGATGTTTAAAA---ATTAAACACGCAA 13878 | | ||| | || ||| | | |||| |||| | || | ||| |||| Sbjct 30887 GCATGAATAGAGCCTTCT--GGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGCAA 30944 Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938 | |||||||| || || ||||| | ||| || || || |||||||| | ||| |||| Sbjct 30945 AGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCA 31004 Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGAATATTCCC 13997 ||||||||||||| || | ||||||||| | |||| ||||| ||||| || || ||||| Sbjct 31005 TCAATCCTCGTTTCTTCAGCCAAAATATAG-AGCAGAATGATCCGGAGAAAAAGATTCCT 31063 Query 13998 TCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTT--TTTTGTTCGATATCC 14055 || || || ||||| |||| | || |||| ||||||| || | ||| | ||| || Sbjct 31064 TCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTTTGGATCG--CACC 31121 Query 14056 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14115 |||| ||||||| | ||| || ||| | ||||||||||| || | || Sbjct 31122 ATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCATAGTA 31181 Query 14116 AATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14175 ||| | || || | | | | |||||||||||||| | ||| ||||| ||| | Sbjct 31182 AATGCTGTTTTTCGGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCG 31241 Query 14176 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTA 14235 ||||||| ||||| || || || || || ||||||||||||| |||||||| ||| | Sbjct 31242 AGTGTATATTTTCTATTGCAATTTGGAATCCATAAAAGCATCGAGCTTCCGGGATTTGAA 31301 Query 14236 CTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14294 | || | | |||| | ||| | |||||||||||| || |||||||| |||||||| Sbjct 31302 CCTCACTGCTGAAAT-TCATGGCGAGATTTTCATTAACAATCCCATCACTGGCTGCAAAG 31360 Query 14295 AATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT 14334 || ||||| | || ||| ||||||| | ||| ||||||| Sbjct 31361 AAGGCCAACACGTGTTTGATAAAGTGT--CTC-TCATTGT 31397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479705542733000