Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq25 107 2e-18 >seq25 Length=104834 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || |||||||| || ||||||||||| | || | |||||| |||||||| ||| Sbjct 78453 GTTGATTCTTTCTGGATGTTGTAATCCGCAAGAGTACGTCCGTCTTCTAGTTGTTTTCCA 78512 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || ||||||||||||||||||| ||||| || ||||||||||| ||| || ||| Sbjct 78513 GCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCCTTT 78572 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||| | | || ||||| | ||| | ||||| || || | ||| Sbjct 78573 ACATTATCGATCGTGTCTGAAGACTCAACTTCCAAAGTGATGGTCTTTCCAGTAAGCGTT 78632 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 78633 TTCACAAAAATCTGCAT 78649 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || | ||||| ||||| ||||| || ||||||||||| | | Sbjct 77967 CCACCACGAAGACGAAGCACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATC-CGC 78025 Query 143018 ATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | | | ||| |||||| ||||||||||| ||| | || ||||||||||| || |||| Sbjct 78026 AA-GCGTTCGTCCGTCTTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAG 78084 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || ||||||||||| || || || | | || | ||||| | | || | Sbjct 78085 GAATTCCTTCTTTGTCCTGGATCTTCGCCTTCACATTGTCAATAGTGTCAGATGACTCGA 78144 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| | ||| | || || ||||||| || || || || |||||||| Sbjct 78145 CTTCCAGAGTTATAGTTTTCCCGGTCAGCGTCTTAACAAAAATTTGCAT 78193 Score = 87.8 bits (96), Expect = 2e-12 Identities = 85/106 (80%), Gaps = 4/106 (4%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA--GTCTTCGAGTTGTTTAC 143045 || |||||||| || ||||||||||| | || | | ||| |||||| |||||||||| Sbjct 78225 GTTGATTCTTTCTGGATGTTGTAATC-CGCAA-GCGTTCGTCCGTCTTCCAGTTGTTTAC 78282 Query 143046 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 | ||| | || ||||||||||| || ||||| || ||||||||||| Sbjct 78283 CGGCAAAAATTAGACGTTGCTGGTCTGGAGGAATTCCTTCTTTGTC 78328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506990665388400