Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq25 159 8e-34 seq3629 123 6e-23 seq3359 118 2e-21 seq821 84.2 5e-11 >seq25 Length=104834 Score = 159 bits (176), Expect = 8e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || ||||||||||| || || || || | ||||| | ||||||||||||||| Sbjct 78447 TGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGAGTACGTCCGTCTTCTAGTTGT 78506 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 |||||||| || || || | || ||||||||||| ||||||||||| || |||||||| Sbjct 78507 TTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGAATCTTG 78566 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || |||||||| || | || || || || || || | || || ||||| |||||| Sbjct 78567 GCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAAAGTGATGGTCTTTCCAGTA 78626 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || ||||| ||||| |||||||| Sbjct 78627 AGCGTTTTCACAAAAATCTGCAT 78649 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || ||||||||||| || || || || | || |||| |||||||| |||||| Sbjct 78219 TGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGCGTTCGTCCGTCTTCCAGTTGT 78278 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || ||||||||||| | || || || ||||| ||||||||||| ||||| ||||| Sbjct 78279 TTACCGGCAAAAATTAGACGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCCTGGATCTTC 78338 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || ||||| || | ||||| || ||| || || | |||||||| || ||||| Sbjct 78339 GCCTTCACATTGTCGATAGTATCTGAAGATTCCACTTCCAACGTAATAGTTTTCCCAGTC 78398 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || || || ||||| || |||||| Sbjct 78399 AGCGTCTTAACAAAAATTTGCATT 78422 Score = 138 bits (152), Expect = 3e-27 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | ||||| ||||||||||| || || || | || |||| ||||| Sbjct 77981 AAGCACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATCCGCAAGCGTTCGTCCGTC 78040 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| |||||||| || ||||||||||| | || || || ||||| ||||||||||| || Sbjct 78041 TTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAGGAATTCCTTCTTTGTC 78100 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||| || || ||||| || | || || | || || || || || ||||| Sbjct 78101 CTGGATCTTCGCCTTCACATTGTCAATAGTGTCAGATGACTCGACTTCCAGAGTTATAGT 78160 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || || ||||| || |||||| Sbjct 78161 TTTCCCGGTCAGCGTCTTAACAAAAATTTGCATT 78194 >seq3629 Length=149247 Score = 123 bits (136), Expect = 6e-23 Identities = 291/434 (67%), Gaps = 13/434 (3%) Strand=Plus/Minus Query 268859 GCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAA 268918 || || ||||||| |||||||| || ||||| |||||||| | ||| ||| | Sbjct 31365 GCCTTCTTTGCAGCCAGTGATGGGATTGTTAATGAAAATCTCGCCATGAATTTCAGCAGT 31306 Query 268919 GAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATT 268978 ||||| || || || ||||| |||| ||||| |||||||| || || ||||||||||| Sbjct 31305 GAGGTTCAAATCCCGGAAGCTCGATGCTTTTATGGATTCCAAATTGCAATAGAAAATATA 31246 Query 268979 CATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAA 269038 || || || |||| |||| || ||||| || || | ||| | ||| ||| Sbjct 31245 CACTCGGAAGTGTATTCGTTATTGATTGATACATACATCAAAGATCCAACCGA----AAA 31190 Query 269039 AGACTATTTTCT----TCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGC 269094 | | |||| || | || ||| || || || | || ||| | ||||||| Sbjct 31189 ACAGCATTTACTATGCGCGATTGAAACAATCCCGTGCGTTACCAATAAAGCACAATGGGC 31130 Query 269095 TCTGAAATGG-ATAAACGATAGCGCGCCT--TACGGAGAAAGGTTAGTTGCTTTTGCCGC 269151 |||||||| | | | || |||| | | |||||| | || || ||||| || Sbjct 31129 GTTGAAATGGTGCGATCCAAAGTATGCCTCGTTTGCAGAAAGAGTGGTAGCCTTTGCGGC 31070 Query 269152 TGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGG 269211 || ||||| || || || || || || || | |||| |||||| |||||||| |||| Sbjct 31069 CGTCGAAGGAATCTTTTTCTCCGGATCATTCTGCTCTATATTTTGGCTGAAGAAACGAGG 31010 Query 269212 CCTTATGCCAGGA-TTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACT 269270 | ||||| ||| || |||| || || || | || || | || ||||| |||| | Sbjct 31009 ATTGATGCCTGGACTTTGCTTT-TCAAATGAGCTCATCAGTCGTGATGAAGGACTACATT 30951 Query 269271 GCGACTTCGCTTGT 269284 | ||||| || ||| Sbjct 30950 GTGACTTTGCATGT 30937 >seq3359 Length=441171 Score = 118 bits (130), Expect = 2e-21 Identities = 115/143 (80%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 |||||| | ||||||||| ||||||||||| ||||||||||| | ||||| |||||||| Sbjct 430359 TAGAGTACGACCGTCTTCAAGTTGTTTTCCGGCAAAAATTAGACGTTGTTGGTCAGGAGG 430300 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCT-TTTACATTTTCTACGGTAT-CGCTAGGTTCT 104509 |||||||| || || |||||| ||||| || ||||| || | || | |||| | |||| Sbjct 430299 AATTCCTTCCTTGTCTTGAATC-TTGCTCTTGACATTGTCAATCGTGTCCGCT-GATTCT 430242 Query 104510 ACCTCTAGTGTAATAGTCTTACC 104532 || || |||||||| || || || Sbjct 430241 ACTTCGAGTGTAATTGTTTTTCC 430219 >seq821 Length=42298 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || |||||||| || |||||||||||| || || || | || |||| ||| ||| Sbjct 35983 AGAACCAGATGTAACGTGCTTTCTTTCTGAATGTTGTAATCCGCTAATGTTCGACCATCT 35924 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 || | |||||| ||||||||||| || | |||||| || || || || ||| Sbjct 35923 TCCAATTGTTTCCCAGCAAAAATGAGACGCTGTTGGTCCGGGGGAATACCT 35873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151343152666460