Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq25 131 2e-25 >seq25 Length=104834 Score = 131 bits (144), Expect = 2e-25 Identities = 176/243 (72%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||| || | | || | |||||||||||| || ||||| || || | Sbjct 78410 AAAAATTTGCATTCCACCACGAAGACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGAT 78469 Query 94828 GTTATAATCGCTCATAGT--GTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| ||||| | ||| || | || || || |||||||| | ||||| | | | Sbjct 78470 GTTGTAATCCGCAAGAGTACGTCCG--TCTTCTAGTTGTTTTCCAGCGAAGATCAGACGT 78527 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 |||||||| |||||||| ||||||||||| | ||| || ||||| || ||| ||| Sbjct 78528 TGCTGATCAGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCCTTTACATTATCGATCGTG 78587 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | || || || | |||||||| ||||||||||| ||||||||||| |||||| Sbjct 78588 TCTGAAGACTCAACTTCCAAAGTGATGGTCTTTCCAGTAAGCGTTTTCACAAAAATCTGC 78647 Query 95006 ATG 95008 ||| Sbjct 78648 ATG 78650 Score = 120 bits (132), Expect = 3e-22 Identities = 174/242 (72%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||| || | | || | |||||||||||| || ||||| || || | Sbjct 78182 AAAAATTTGCATTCCACCACGAAGACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGAT 78241 Query 94828 GTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| ||||| | || || ||| | || ||||| ||||| ||| |||| |||| | | Sbjct 78242 GTTGTAATC-CGCA-AGCGTTCGTCCGTCTTCCAGTTGTTTACCGGCAAAAATTAGACGT 78299 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||| ||||||||||| ||||||||||| | || || ||||| || | ||| ||| Sbjct 78300 TGCTGGTCTGGAGGAATTCCTTCTTTGTCCTGGATCTTCGCCTTCACATTGTCGATAGTA 78359 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | || || || | ||| || ||||| ||||| || || || ||||| || ||| Sbjct 78360 TCTGAAGATTCCACTTCCAACGTAATAGTTTTCCCAGTCAGCGTCTTAACAAAAATTTGC 78419 Query 95006 AT 95007 || Sbjct 78420 AT 78421 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCC 94855 ||||| || | ||||| || || || | ||| ||||| | || || ||| | || Sbjct 77984 CACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATC-CGCA-AGCGTTCGTCCGTCT 78041 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 ||||| ||||| ||| |||| |||| | |||||| ||||||||||| ||||||||||| Sbjct 78042 TCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCC 78101 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | || || ||||| || | | | |||||||| ||||| || | || || ||| Sbjct 78102 TGGATCTTCGCCTTCACATTGTCAATAGTGTCAGATGACTCGACTTCCAGAGTTATAGTT 78161 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||| || ||||| Sbjct 78162 TTCCCGGTCAGCGTCTTAACAAAAATTTGCAT 78193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448270214368200