Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq3629 150 2e-31 >seq3629 Length=149247 Score = 150 bits (166), Expect = 2e-31 Identities = 399/605 (66%), Gaps = 14/605 (2%) Strand=Plus/Plus Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527 |||||| ||||||||| |||||||| | |||||||| | ||| || | ||||| |||| Sbjct 30930 ACATCAGACATGCAAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAA 30989 Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCA-AATGCTCCT 21586 | | || ||||| ||||||| || || | ||||||||| || ||| |||| ||| Sbjct 30990 AGCAAAGTCCAGGCATCAATCCTCGTTTCTTCAGCCAAAATATAGA-GCAGAATGATCCG 31048 Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAG-ATTC 21645 || || || || || || ||||| ||||| || || | || ||| | | | | || | Sbjct 31049 GAGAAAAAGATTCCTTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATAC 31108 Query 21646 TTT--ATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTA 21703 ||| ||| | |||||| ||||||| ||| || | ||| || ||||| Sbjct 31109 TTTGGATCGCA---CCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTT 31165 Query 21704 TCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNN 21763 ||||| || || | ||| | |||||| | ||| | ||| Sbjct 31166 TCAATCGCGCATAGTAAATGCTGTTTTTCGGTTGGATCTTTGATGTATGTATCAATCAAT 31225 Query 21764 NNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTT 21823 ||||| ||| || |||||||||||||| || || || ||||| ||||| |||| Sbjct 31226 AACGAATACACTTCCGAGTGTATATTTTCTATTGCAATTTGGAATCCATAAAAGCATCGA 31285 Query 21824 GCCTCTGAACATTGAACCTC-GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCC 21882 || || | ||||||||| | |||| || || | |||||||| || || || Sbjct 31286 GCTTCCGGGATTTGAACCTCACTGCTGAAATTCATG-GCGAGATTTTCATTAACAATCCC 31344 Query 21883 ATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAA 21942 ||||||||| ||||| || ||||| | | ||| ||||| | || || || || | || Sbjct 31345 ATCACTGGCTGCAAAGAAGGCCAACACGTGTTTGATAAAGTGTCTCTCATTGTCCGATAT 31404 Query 21943 TTTTTTCCAATCTAATAAATCTTTTG--ATAAATCTACTTCTTCAGTTGTCCAAAAGCTA 22000 || ||| || || || | || ||||| | |||||| | ||||||||||| Sbjct 31405 ATTAAGCCAGTC--ATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTT 31462 Query 22001 GCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAAC 22060 || || || |||||||| ||| || ||| | | ||| ||||||| ||||| Sbjct 31463 GCCTCTGCTTTCTTATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAG 31522 Query 22061 CTGTT 22065 | ||| Sbjct 31523 CGGTT 31527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531875900393800