Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2423 279 1e-69 seq3502 156 1e-32 seq3629 125 2e-23 >seq2423 Length=50609 Score = 279 bits (308), Expect = 1e-69 Identities = 812/1224 (66%), Gaps = 35/1224 (3%) Strand=Plus/Plus Query 363387 TATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGT 363446 |||||| || | ||| || |||||||||| || || | ||| | ||||| | | ||| Sbjct 19607 TATTTT-GGCTTTAAAACTCTGGAGAAATCGTATCTGTTGCGTGTGAATGGAAA-AGTGT 19664 Query 363447 -TGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTG 363505 ||||||||| || |||||| ||||||| || ||| | || || || | || | | Sbjct 19665 GTGAACGCCCACAACATATGATAATGCGAGTGGCTGTCGGCATACACAAAGAGAATTTGG 19724 Query 363506 ATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTC----GTGTATTCACGCACGCCACG 363561 |||||| | ||||| ||| | | | || | | || | || ||||| || || Sbjct 19725 ATGCCGTTTTGGAAACGTATGAACACAT--GT-CACAAAAGT-TCTTTACGCATGCAACT 19780 Query 363562 CCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAA 363621 || || | | |||||| ||||| | | || || | || || || ||||| || Sbjct 19781 CCGACGCTTTTCAATGCGGGAACGCCTCGACCCCAATTATCGTCGTGTTTTCTATTATCC 19840 Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||| | || ||||| ||||| || || | ||||| || || | ||||| |||||| Sbjct 19841 ATGCAAGATGATTCTATCGACGGCATTTACGACACGCTGAAACAATGTGCGTGTATTTCA 19900 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCG-TGCACAGAACAGTTACAT 363740 ||| || ||||| ||||| || || |||| |||| | ||| |||||||| || Sbjct 19901 AAGTGGGCTGGCGGTATTGGCGTCAGTATTTCCAATATTCGCTCCACC-AACAGTTATAT 19959 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 |||||| || ||| |||||||| | ||||| |||||||| ||||| | | || Sbjct 19960 TCGCGGGACGAATGGAAGTTCGAATGGAATTGTTCCAATGCTTCGGGTGTTCAATGACAC 20019 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGA 363860 || | ||||| || || ||||| || ||||| |||||| | ||||| || ||||| || Sbjct 20020 AGCTCGATACGTTGATCAAGGTGGTGGGAAGCGGAAAGGGTCTTTTGCAATTTATCTAGA 20079 Query 363861 GCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGA 363920 ||| ||||| ||||| ||||||||||| || || || || || ||||| || Sbjct 20080 GCCCTGGCATGCGGATATCTTTGAGTTTCTGGAACTACGTAAGAATCATGGAAATGAACT 20139 Query 363921 ATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGT 363980 || ||||| ||| | || ||||| |||||| | | || | |||||||| || || Sbjct 20140 CCATCGAGCACGAGATTTATTTTATGCTCTTTGGATCCCCGATCTGTTTATGAAACGTGT 20199 Query 363981 GG-AGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATG 364039 || || || ||||| ||| | || || || |||| |||| | |||| || Sbjct 20200 GGAAGACAACCAAGAA-TGGAGTTTATTCTGTCCGAACGAGGCTCCACGACTTTATGAGA 20258 Query 364040 TATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTA 364099 |||||| ||| | || ||| |||| |||||||| || || | | || || | Sbjct 20259 CATGGGGAAGCGAATTTGATGCGTTATATGAAAAGTACGAGTCTCAAAACATTGCCCGAA 20318 Query 364100 AGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAA 364159 |||| | || ||| | | ||||||||||| ||||| ||||||||||| |||| Sbjct 20319 AGACTGTCAAAGCCCAGCAATTGTGGTTTGCCATTTTGGATAGTCAGATTGAGACCGGAA 20378 Query 364160 CACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTA 364219 | || |||||| | |||||||| | || || || || ||||| |||||| | ||||| | Sbjct 20379 CGCCGTATATGCTTTACAAAGACGCTTGTAATCGTAAATCCAATCAGCAGAATCTTGGAA 20438 Query 364220 CAATTC-AGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACT 364278 | |||| | || ||||| || || || || || || ||| | | || | || Sbjct 20439 CCATTCGATCA-AGCAATCTCTGCTGTGAAATCATCGAGTACTCAGACTCCAAAGAAGTG 20497 Query 364279 GCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTT--TGTAAAAGATGGTACTTTTG 364336 || ||||| || | || || ||||| | | || |||| ||| | | || Sbjct 20498 GCAGTATGCAATTTGGCTTCCATCGCATTGTCAAAATTTGTGTATCAGAAAGAATTT--- 20554 Query 364337 ACCACCAGCATCTTTATGACGTAA--CCTATCAT-GCTACTTGCAATCTCGACAAGGTTA 364393 | ||| |||| ||| || | | || | ||| |||||| |||| | | Sbjct 20555 -CAGTTTGCAAAATTAT-ACGAAATCACAAAAATCGTTACGAAAAATCTCAACAAAATCA 20612 Query 364394 TCGACAAGAATTATTATCCAATTCCTGAAGC-CGAGCGTTCTAATATGCGTCATCGCCCG 364452 | || ||||||||||| ||||||||||| | || | | ||| ||| ||||| ||| Sbjct 20613 TTGATCTCAATTATTATCCGATTCCTGAAGCACAAGTGAGC-AATCAGCGACATCGACCG 20671 Query 364453 ATTGGTCTTGGTGTACAGGGCCTCGCTG--ACGTTTTTA-TGATGCTCAAGATGGCATTT 364509 ||||| | || || || || || || | ||||||||| ||||| | | ||||| Sbjct 20672 ATTGGAATCGGCGTTCAAGGTCTTGCCGATACGTTTTTACTGATG---AGTCTTCCATTT 20728 Query 364510 GATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCA 364569 || | ||||| | || || || || || |||||||| |||||||| || || Sbjct 20729 GAAAGCAAAGCTGCTCGCGAGCTCAACAAAGAAATTTTTGAAACGATGTATTTCGCGGCG 20788 Query 364570 ATGACTGCTTCGTGTGATTTGGCA 364593 ||| ||||| || |||||| Sbjct 20789 ATGGAAGCTTCCATGGAATTGGCA 20812 >seq3502 Length=87171 Score = 156 bits (172), Expect = 1e-32 Identities = 282/406 (69%), Gaps = 6/406 (1%) Strand=Plus/Plus Query 111485 AGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAA 111544 |||||| ||| | |||||| | ||||| ||||||||||| || || |||||| |||| Sbjct 14902 AGAAGGCGATTTAGGACCAATCTACGGCTTTCAATGGCGTCATTTCGGTGCAAGTTACAC 14961 Query 111545 AACCATGCA--CGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGAT 111602 | ||||| || | | | | | ||||| ||||||| | |||| || | Sbjct 14962 AGATATGCATGCGGATTACA-GCGGC-CAGGGCTTTGATCAACTCGCCGATGTGATACA- 15018 Query 111603 CAAATTAAGAACA-ACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGC 111661 |||| | | ||| ||| || || ||| || || || | || ||||| |||| | Sbjct 15019 CAAACTCAAAACTGACCAAAATTGTCGACGTATCATCTTATCCGCTTGGAATCCAACCGA 15078 Query 111662 ATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGG 111721 || | |||||||| | || || |||||||| |||||||| ||||| || | || Sbjct 15079 TTTAGCCGAAATGGCATTACCTCCCTGTCATCTCATGTGCCAATTTTACGTTGCAAATGG 15138 Query 111722 GATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAA 111781 | | |||||||||||||| |||||||| |||||||||||||| || ||||| || || Sbjct 15139 GGAATTATCATGCCAAATGTACCAGCGATCCGCTGATATTGGTCTGGGCGTTCCATTCAA 15198 Query 111782 TATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGG 111841 |||||| || ||||| || | || | || || || | || ||||| |||| || Sbjct 15199 TATTGCTAGCTACGCGCTTTTGACAAAAATGATTGCACACGTGACTGATCTCCAACCCGG 15258 Query 111842 TGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCAC 111887 || || |||| || ||||||||||| ||| | |||| || ||| Sbjct 15259 CGAGTTTGTTCATGTGATCGGAGATGCCCATATCTACATGAATCAC 15304 >seq3629 Length=149247 Score = 125 bits (138), Expect = 2e-23 Identities = 491/760 (65%), Gaps = 18/760 (2%) Strand=Plus/Minus Query 22197 ACATTTTATCAAATATATTCTAGCATTCTTTGCTACCGCAGACGGTATAGTTTTTGAGAA 22256 ||| ||||||||| | | | || |||||||| || || || || ||| ||| || Sbjct 31387 ACACTTTATCAAACACGTGTTGGCCTTCTTTGCAGCCAGTGATGGGATTGTTAATGAAAA 31328 Query 22257 TCTAGTGACTAATTTT-GCATCTGAAATTCAATACCCAGAGGCCAGATGTTTCTATGGTG 22315 ||| | | ||||| ||| ||| ||||| ||| || || |||| || ||||| Sbjct 31327 TCTCGCCATGAATTTCAGCAG-TGAGGTTCAAATCCCGGAAGCTCGATGCTTTTATGGAT 31269 Query 22316 TGCAAATGATGATTGAAAATGTTCACGCGGAAACATATTC--TAT-GAT-GCTACAGTCA 22371 | ||||| || |||||| | ||| ||||| ||||| ||| ||| | |||| || Sbjct 31268 TCCAAATTGCAATAGAAAATATACACTCGGAAGTGTATTCGTTATTGATTGATACATACA 31209 Query 22372 CTCGTAGAAGATAAAGACGAACAACGAAACTTATTCCGCGCGATTCGCACCATTCAATCA 22431 | ||||| | |||| ||| | ||| | |||||||| || || | | Sbjct 31208 ----TCAAAGATCCAACCGAAAAACAGCATTTACTATGCGCGATTGAAACAATCCCGTGC 31153 Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAA--CAATGAACGT-TCATTCGCG 22488 ||| ||||| ||| | |||||| |||||||| | ||| | | | || || || Sbjct 31152 GTTACCAATAAAGCACAATGGGCGTTGAAATGGTGCGATCCAAAGTATGCCTCGTTTGCA 31093 Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 ||| | | | || ||||| | || ||||| || || || || ||| |||| || | Sbjct 31092 GAAAGAGTGGTAGCCTTTGCGGCCGTCGAAGGAATCTTTTTCTCCGGATCATTCTGCTCT 31033 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || |||||||| || ||||| | | | ||||| || || |||||||||||| | || Sbjct 31032 ATATTTTGGCTGAAGAAACGAGGATTGATGCCTGGACTTTGCTTTTCAAATGAGCTCATC 30973 Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATT 22668 || || ||||| || || ||| || ||||| ||| || | || ||| | | | Sbjct 30972 AGTCGTGATGAAGGACTACATTGTGACTTTGCATGTCTGATGTACTCGAAAC---TGGTA 30916 Query 22669 CATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGT 22728 |||| |||||| | | || | | || || ||| | | || ||| | |||| Sbjct 30915 AATAAGCTTCCAGAAGGCTCTATTCATGCAATCATTTCCGACGCCGTTATCATCGAACAA 30856 Query 22729 CTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGT 22788 |||| | | || | | ||||| || ||||| || ||| | | ||| || Sbjct 30855 GAATTTGTACGAGATTCACTTCCAGTCGAGCTAATTGGAATGAATTCAAGTTTGATGGGT 30796 Query 22789 ACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGG-TTATGCAAAGCATTA 22847 ||| || | ||||| || ||||| | ||| | |||| || | || ||| || Sbjct 30795 CAATACATCGAGTTTGTGGCGGATCGATTGTTACATGCACTTGGCGTCAGC-AAGTTATA 30737 Query 22848 TAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTT 22907 | ||| |||||| ||||| |||||||| | ||||| || ||||||| || || || Sbjct 30736 TCACGCTTCTAATCCCTTTGACTGGATGGATATGATTTCTCTGCAAGGAAAAACAAACTT 30677 Query 22908 CTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTT 22947 || || ||| | ||||| ||||| ||| | |||||| Sbjct 30676 TTTTGAGAAACGCGTTGGAGAATATGCGAAATCTGGTGTT 30637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303291061428590