Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq25 147 2e-30 seq655 98.7 1e-15 seq821 86.0 6e-12 >seq25 Length=104834 Score = 147 bits (162), Expect = 2e-30 Identities = 161/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| ||||||| ||| || ||||| |||||||||||||| || | || || |||| Sbjct 77981 AAGCACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATCCGCAAGCGTTCGTCCGTC 78040 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| || || || |||||| |||| || || |||||||| ||||||||||||||||| || Sbjct 78041 TTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAGGAATTCCTTCTTTGTC 78100 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| || | || ||| | || ||||| | ||||| || Sbjct 78101 CTGGATCTTCGCCTTCACATTGTCAATAGTGTCAGATGACTCGACTTCCAGAGTTATAGT 78160 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || ||||||| || || || |||||||||||| Sbjct 78161 TTTCCCGGTCAGCGTCTTAACAAAAATTTGCATT 78194 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | || | ||| |||||||| || ||||||||||| || | || || ||||| Sbjct 78210 AGCACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGCGTTCGTCCGTCT 78269 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || || || |||||| |||| || || |||||||| ||||||||||||||||| || Sbjct 78270 TCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCC 78329 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | ||||| | |||||||| | || | || Sbjct 78330 TGGATCTTCGCCTTCACATTGTCGATAGTATCTGAAGATTCCACTTCCAACGTAATAGTT 78389 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || |||| || || || |||||||||||| Sbjct 78390 TTCCCAGTCAGCGTCTTAACAAAAATTTGCATT 78422 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | || | ||| |||||||| || ||||||||||| || | || || ||||| Sbjct 78438 AGCACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGAGTACGTCCGTCT 78497 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || || || || || | || || || ||||| || ||||||||||||||||| ||| Sbjct 78498 TCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCT 78557 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||||||| || | || || | || ||||| | ||| | |||| Sbjct 78558 TGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAAAGTGATGGTC 78617 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | ||||| || ||||| ||||| Sbjct 78618 TTTCCAGTAAGCGTTTTCACAAAAATCTGCAT 78649 >seq655 Length=45005 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/196 (71%), Gaps = 1/196 (1%) Strand=Plus/Plus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 ||||||| ||||||||||| |||| || || |||| || | || || || || ||| Sbjct 27415 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 27474 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 | | ||||| |||||||||||||||||||| || ||||| || || ||| ||| | Sbjct 27475 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 27534 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | || || | || || || | ||| | || || ||||| | ||||| |||| Sbjct 27535 CGATGGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTTTTGACGA 27594 Query 64434 AAATTTGCATT-TTAA 64448 |||| |||||| |||| Sbjct 27595 AAATCTGCATTCTTAA 27610 >seq821 Length=42298 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| |||| || || ||||| | ||| |||||| |||||||||||||| || Sbjct 35999 ACCACCGCGTAATCGTAGAACCAGATGTAACGTGCTTTCTTTCTGAATGTTGTAATCCGC 35940 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| | || || || ||| ||||||| ||||| ||||| || || Sbjct 35939 TAATGTTCGACCATCTTCCAATTGTTTCCCAGCAAAAATGAGACGCTGTTGGTCCGGGGG 35880 Query 64336 AATTCCT 64342 ||| ||| Sbjct 35879 AATACCT 35873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499621410377800