Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq25 102 8e-17 seq655 82.4 8e-11 >seq25 Length=104834 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || ||||||||||| || | || || ||| || ||||||||||||| | Sbjct 78000 GACTCTTTCTGAATGTTGTAATCCGCAAGCGTTCGTCCGTCTTCCAGTTGTTTACCGGCA 78059 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | |||||||| || ||||| ||||| || ||||||||||| ||| || || | | Sbjct 78060 AAAATTAGACGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCCTGGATCTTCGCCTTCACA 78119 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||| | ||||| || || | || | ||||| || ||||| || || Sbjct 78120 TTG-TCAATAGTGTCAGATGACTCGACTTCCAGAGTTATAGTTTTCCCGGTCAGCGTCTT 78178 Query 138600 TACAAAAATCTGCAT 138614 |||||||| ||||| Sbjct 78179 AACAAAAATTTGCAT 78193 Score = 100 bits (110), Expect = 3e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| || || || |||||||| || | || || ||| || ||||||||||||| Sbjct 78226 TTGATTCTTTCTGGATGTTGTAATCCGCAAGCGTTCGTCCGTCTTCCAGTTGTTTACCGG 78285 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | | |||||||| || ||||| ||||| || ||||||||||| ||| || || | Sbjct 78286 CAAAAATTAGACGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCCTGGATCTTCGCCTTCA 78345 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | || || | || ||||| || | ||| | ||||| |||||||| || Sbjct 78346 CATTG-TCGATAGTATCTGAAGATTCCACTTCCAACGTAATAGTTTTCCCAGTCAGCGTC 78404 Query 138598 TTTACAAAAATCTGCAT 138614 || |||||||| ||||| Sbjct 78405 TTAACAAAAATTTGCAT 78421 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| || || || |||||||| || | |||||| ||| || |||||||| || | Sbjct 78454 TTGATTCTTTCTGGATGTTGTAATCCGCAAGAGTACGTCCGTCTTCTAGTTGTTTTCCAG 78513 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTT 138537 |||| ||||| || || || ||||| || ||||||||||| ||| | || | ||| Sbjct 78514 CGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTC-TTGAATCTTGGCCTTT 78572 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | | || | ||||| | ||||| || || | || | || || ||||| || ||| Sbjct 78573 ACATTATCGATCGTGTCTGAAGACTCAACTTCCAAAGTGATGGTCTTTCCAGTAAGCGTT 78632 Query 138598 TTTACAAAAATCTGCATGG 138616 || |||||||||||||||| Sbjct 78633 TTCACAAAAATCTGCATGG 78651 >seq655 Length=45005 Score = 82.4 bits (90), Expect = 8e-11 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 138427 TTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATT 138486 ||||| |||||||| || | || || |||||| | |||||| || | | || Sbjct 27417 TTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAATC 27476 Query 138487 AGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTC 138545 | |||||||||||| ||||| || ||||| ||||| ||| | || | || | | || Sbjct 27477 AAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTC-TTGAATCTTCGCCTTCACATTATC 27535 Query 138546 CACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAA 138605 | |||||||| || || ||||| | || | ||||| || || || ||||| || || Sbjct 27536 GATGGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTTTTGACGAA 27595 Query 138606 AATCTGCAT 138614 ||||||||| Sbjct 27596 AATCTGCAT 27604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496239168716400