Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq25 113 4e-20 seq655 95.1 1e-14 >seq25 Length=104834 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | |||||| || | ||| || ||||| || || |||||||| | Sbjct 78422 TCCACCACGAAGACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGC 78481 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || || || ||||| |||||||||||| |||||| || |||||||| ||||| Sbjct 78482 AAGAGTACGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGG 78541 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || ||||| || || ||| | | |||| ||||| | | ||| || Sbjct 78542 AATTCCTTCTTTGTCTTGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAAC 78601 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 ||| | || | || || || || || ||||| |||||||||||||||| Sbjct 78602 TTCCAAAGTGATGGTCTTTCCAGTAAGCGTTTTCACAAAAATCTGCATGG 78651 Score = 109 bits (120), Expect = 5e-19 Identities = 164/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 126883 TGCT-CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAAT 126941 |||| ||||| || | || | ||||| ||| | |||||||||||| ||||| ||||||| Sbjct 77962 TGCTACCACCACGAAGACGAAGCACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAAT 78021 Query 126942 CGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGG 127001 | | | ||| || || || || ||||| || || | || | || ||||| || | Sbjct 78022 CCGCAAGCGTTCGTCCGTCTTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTG 78081 Query 127002 GAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCT 127061 |||| || || || |||||| ||| ||| ||| | | || | ||||| | || Sbjct 78082 GAGGAATTCCTTCTTTGTCCTGGATCTTCGCCTTCACATTGTCAATAGTGTCAGATGACT 78141 Query 127062 CGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||||| | || | ||||| |||||||| || || |||||||| ||||| Sbjct 78142 CGACTTCCAGAGTTATAGTTTTCCCGGTCAGCGTCTTAACAAAAATTTGCAT 78193 >seq655 Length=45005 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 ||||||| || |||||||| | | ||| || || || | |||||||| ||| | | Sbjct 27415 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 27474 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTT 127043 |||| ||||| || |||||||| || || |||||||| || ||| ||| | | | Sbjct 27475 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 27534 Query 127044 CGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 ||| |||||| | ||||| || | || | ||||| ||||| || ||||| || | Sbjct 27535 CGATGGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTTTTGACGA 27594 Query 127104 AAATCTGCAT 127113 |||||||||| Sbjct 27595 AAATCTGCAT 27604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475478540618800