Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3629 105 8e-18 seq2423 86.0 8e-12 >seq3629 Length=149247 Score = 105 bits (116), Expect = 8e-18 Identities = 187/270 (69%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 || || || || ||||| |||||| ||||| || ||||| || || ||||| | || Sbjct 30953 TGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCATCAATCCT 31012 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 || ||||||| ||| || || | || ||||| || ||||| ||||| || || || | Sbjct 31013 CGTTTCTTCAGCCAAAATATAGAGCAGAATGATCCGGAGAAAAAGATTCCTTCGACGGCC 31072 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 127711 || || || | | | || ||||| ||| |||||| ||| |||| |||| |||| Sbjct 31073 GCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTTTGGATCGCACCATTTCAACGCC 31132 Query 127712 CACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAG-AGTTCCTTCTT 127770 || ||||| || || | || |||| || | ||||| || || | | || || Sbjct 31133 CATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCG-CATAGTAAATGCTGTTT 31191 Query 127771 TTCTGATGGATCTTTGATGTACTTATCTAT 127800 ||| | ||||||||||||||| |||| || Sbjct 31192 TTCGGTTGGATCTTTGATGTATGTATCAAT 31221 >seq2423 Length=50609 Score = 86.0 bits (94), Expect = 8e-12 Identities = 368/574 (64%), Gaps = 11/574 (2%) Strand=Plus/Minus Query 116655 CTCGTACTTTGTGTAGAGGGCCTCAAACTC--TTCACCCACAGCCTCTGAGAGCCCTGGT 116712 |||||||||| || | || ||||| || ||| |||| | ||| | || | ||| Sbjct 20299 CTCGTACTTTTCATATAACGCATCAAATTCGCTTC-CCCAT-GTCTCATAAAGTCGTGGA 20242 Query 116713 GCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGG 116772 |||| | |||||||| | | ||||| || || || || ||||| || || Sbjct 20241 GCCTCGTTCGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACACGTTTCATAAACAGA 20182 Query 116773 TCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 116832 || |||||||| || || | || | ||| || ||| ||||| || ||||| Sbjct 20181 TCGGGGATCCAAAGAGCATAAAATAAATCTCGTGCTCGATGGAGTTCATTTCCATGATTC 20122 Query 116833 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 116892 ||| | |||| ||| || | ||||||||| ||||| || || || || | || | Sbjct 20121 TTACGTAGTTCCAGAAACTCAAAGATATCCGCATGCCAGGGCTCTAGATAAATTGCAAAA 20062 Query 116893 GACCCCTTGCGA---CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGA 116949 ||||| || || | |||| | || | || || | || || | || || || ||| Sbjct 20061 GACCCTTTCCGCTTCCCACCACCTTGATCAACGTATCGAGCTGTGTCATTGAACACCCGA 20002 Query 116950 AGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCT 117009 |||||||||| || |||| || ||||| ||||| |||||| | ||| ||| Sbjct 20001 AGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAACTGTTGGTGGAG 19942 Query 117010 CTGACATCGTGGATGTGC--ATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACT 117067 | || || |||| | | | |||||||| || ||||||||||| || || || | Sbjct 19941 C-GA-ATATTGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATACACGCACATT 19884 Query 117068 CCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGC 117127 | || || |||| || || ||||| || ||| | | | | | || || || Sbjct 19883 GTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATAGAAAACACG 19824 Query 117128 TCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACA 117187 ||| | ||| || | || || || || ||||| || || || || || || | || | Sbjct 19823 ACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCATGCGTAAAGA 19764 Query 117188 TACCTTGGGACATCTTATCGTAGGTCTCCAAGAC 117221 ||| ||||| | || || || ||||| || Sbjct 19763 ACTTTTGTGACATGTGTTCATACGTTTCCAAAAC 19730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613478480194200