Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq3405 118 1e-21 >seq3405 Length=99690 Score = 118 bits (130), Expect = 1e-21 Identities = 272/399 (68%), Gaps = 8/399 (2%) Strand=Plus/Minus Query 159388 AATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCA 159447 |||||||| ||||| ||| ||| || |||||||| ||||| || || || ||||| Sbjct 56581 AATGTATGCTTGATTCCAATGTCTGCTCATGGAACGAATCCAGCTAGTGCGGTAATGGCT 56522 Query 159448 GGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGA-CATCAAAGATCT 159506 || ||||||||||| | ||| ||| || || | || || || || | || | ||| | Sbjct 56521 GGTATGAAAGTTGTGGTCGTCCAGTCAGACGACAAGGGGAATATCGATCGTC-AGGATTT 56463 Query 159507 AGAGAAGAAAGCAATCATGAATACATTTGAACTGTCATGTATTATGATTACATATCCATC 159566 ||| || ||||| | | | | || |||| || | | ||||| || || ||||| Sbjct 56462 AGAAAACAAAGCGAAAAAGCACGCAAATGAATTGAGTGCTCTCATGATCACCTACCCATC 56403 Query 159567 TACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAG-ATTG-TTCATGAGAAT 159624 || ||||||| || | | ||| | | |||||| | | |||| | || | || Sbjct 56402 CACGTATGGTGTCTTCG-AGCAAGGAGTCCA-AGATATCTGCGCATTGATCCACTCGTAT 56345 Query 159625 GGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCT-AGCAAAACC 159683 ||||| || || || | ||||| || ||| | |||||||| || || || |||| | Sbjct 56344 GGTGGCCAAGTGTACATGGATGGAGCGAATATGAATGCACAAGTCGGCCTGTGCAATCCG 56285 Query 159684 ATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACA 159743 | | | ||| || ||||| || ||||| || | || || |||||||| || || || Sbjct 56284 AAAT-CCATTGGAGCTGATGTCTGCCATCTCAATCTCCACAAAACATTCTGCATCCCTCA 56226 Query 159744 TGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGC 159782 || ||||| ||||| || || || | ||||| ||||| Sbjct 56225 CGGTGGTGGTGGTCCAGGAGTTGGAACCATTGGCGTAGC 56187 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 157882 ATAGGTCAAGGATACTATGGAACCATCACACCCCCAGTCATACAGCGAAACGTTCTTGAG 157941 || || ||||| || ||| |||||||||| | || || || || ||| | || ||| Sbjct 58144 ATCGGCCAAGGGTATCATGACTGCATCACACCCGCGGTTATCCAACGTAACATGCTGGAG 58085 Query 157942 AATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTG 158001 ||||| | ||||| ||| | || || || || ||||||||||| || || || ||||| Sbjct 58084 AATCCGGGCTGGTATACAGCGTATACGCCGTACCAAGCTGAGATCTCACAAGGTCGATTG 58025 Query 158002 GAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCAAAC 158061 ||| | | |||| || || | | ||| ||||||||| | | | || Sbjct 58024 GAAATGCTGCTGAATTTTCAGACAGTGGTTCAAGATCTCACAGGATTGGAATTCTCGAAT 57965 Query 158062 GCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 || || || ||||||||||| || || ||||| ||||||||| Sbjct 57964 GCGTCACTTTTAGATGAAGCGACAGCTGCAGCTGAAGCAATG 57923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588023671853200