Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq3405 123 3e-23 >seq3405 Length=99690 Score = 123 bits (136), Expect = 3e-23 Identities = 273/399 (68%), Gaps = 8/399 (2%) Strand=Plus/Plus Query 138180 GCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTA 138239 ||||| ||||| | || || || ||||| ||||| || || || || |||||||| || Sbjct 56187 GCTACGCCAATGGTTCCAACTCCTGGACCACCACCACCGTGAGGGATGCAGAATGTTTTG 56246 Query 138240 TGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCT-AGACCTACCTG 138298 || | ||| ||||| || ||||| || ||| | | | | |||| || || || || Sbjct 56247 TGGAGATTGAGATGGCAGACATCAGCTCCAATGG-ATTTCGGATTGCACAGGCCGACTTG 56305 Query 138299 TGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAA-CGAT-CTTA 138356 |||||| | ||| || ||||| | || || || ||||||| || | | || | | Sbjct 56306 TGCATTCATATTCGCTCCATCCATGTACACTTGGCCACCATACGAGTGGATCAATGCGCA 56365 Query 138357 CATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATA 138416 |||||| | | ||| | | || ||||||| || ||||| || || ||||| | | Sbjct 56366 GATATCT-TGGACTCCTTGCT-CGAAGACACCATACGTGGATGGGTAGGTGATCATGAGA 56423 Query 138417 CATGAGAGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATG-TCTATGTT 138475 | |||| || | | | | ||||| || |||| ||| | || | || || || Sbjct 56424 GCACTCAATTCATTTGCGTGCTTTTTCGCTTTGTTTTCTAAATCCT-GACGATCGATATT 56482 Query 138476 GCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGG 138535 || | || || ||| ||| | ||||||||||| || ||||| || |||||||| || Sbjct 56483 CCCCTTGTCGTCTGACTGGACGACCACAACTTTCATACCAGCCATTACCGCACTAGCTGG 56542 Query 138536 ATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATT 138574 ||| |||||||| || ||| ||| |||| |||||||| Sbjct 56543 ATTCGTTCCATGAGCAGACATTGGAATCAAGCATACATT 56581 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 |||||| || ||||| || || ||||||||||| || || || || | | | ||||| Sbjct 57923 CATTGCTTCAGCTGCAGCTGTCGCTTCATCTAAAAGTGACGCATTCGAGAATTCCAATCC 57982 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||| || ||| | | || || |||| | | |||||||| || || || || Sbjct 57983 TGTGAGATCTTGAACCACTGTCTGAAAATTCAGCAGCATTTCCAATCGACCTTGTGAGAT 58042 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTG 140038 ||||||||| || || || || | ||| ||||| | |||||||| || | ||| || || Sbjct 58043 CTCAGCTTGGTACGGCGTATACGCTGTATACCAGCCCGGATTCTCCAGCATGTTACGTTG 58102 Query 140039 TATGACTGGGGGTGTAATGGTTCCATAGTATCCTTGACCTAT 140080 || || | |||||| ||| ||| || ||||| || || Sbjct 58103 GATAACCGCGGGTGTGATGCAGTCATGATACCCTTGGCCGAT 58144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578971295637400