Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2423 188 2e-42 seq2372 93.3 1e-13 seq2701 91.5 4e-13 seq1629 84.2 6e-11 >seq2423 Length=50609 Score = 188 bits (208), Expect = 2e-42 Identities = 648/997 (65%), Gaps = 44/997 (4%) Strand=Plus/Minus Query 155397 aaaaaTGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTC 155456 ||||| || ||||| | ||| ||||| || || || | || ||||| | | ||||||| Sbjct 20709 AAAAACGTATCGGCAAGACCTTGAACGCCGATTCCAATCGGTCGATGTCGCTGATTGCTC 20650 Query 155457 CTGCTTGT-CTTCTTGTTTGGG-TAAAAATTCACATCAATAATGTTATTTAAATTT---G 155511 ||||| |||| | | || ||| |||| | |||||| || || || | |||| | Sbjct 20649 A--CTTGTGCTTCAGGAATCGGATAATAATTGAGATCAATGATTTTGTTGAGATTTTTCG 20592 Query 155512 TAACCAATACCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTA 155571 |||| | | || || ||| | ||||| || | | |||| ||| || || | Sbjct 20591 TAACGATTTTTGTGATTTCGTAT---AATTTTGCAAACTGAAATTCTTT---CTGATACA 20538 Query 155572 CAAACAT--ACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCT 155629 |||| | || | | | || || |||| ||| ||||| || || ||| ||| Sbjct 20537 CAAATTTTGACAATG--CGATGGAAGCCAAATTGCATACTGCCACTTCTTTGGAGTCTGA 20480 Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGAT-----GGTGCCTAAATTCTTC 155684 ||| || | || |||||||| || || |||||| ||| || | ||||| | Sbjct 20479 GTACTCGATGATTTCACAGCAGAGATTG-----CTTGATCGAATGGTTCCAAGATTCTGC 20425 Query 155685 TGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATC 155744 || || ||||||| |||||||| || ||||| || || || || ||||| ||||| ||| Sbjct 20424 TGATTGGATTTACGATTACAAGCGTCTTTGTAAAGCATATACGGCGTTCCGGTCTCAATC 20365 Query 155745 TGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCT 155804 || |||| ||| | ||| | | |||| || | ||| | || | Sbjct 20364 TGACTATCCAAAATGGCAAACCACAATTGCTGGGCTTTGACAGTCTTTCGGGCAATGTTT 20305 Query 155805 TCCGACTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTC 155862 | ||||| || ||||||||| || | | | || || | | ||| |||| Sbjct 20304 TGAGACTCGTACTTTTCATATAACGCATCAAATTCGCTTCCCCATGTC--TCATAAAGTC 20247 Query 155863 CAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAA 155922 || || | || || || | ||| || || | ||||| | ||||| Sbjct 20246 GTGGAGCCTCGTTCGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACACGTTTCATAA 20187 Query 155923 ATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCT--TTGACTCCTCATCGCC 155980 | | ||| ||||| |||||| || | || | ||| | || | |||| || Sbjct 20186 ACAGATCGGGGATCCAAAGAGCATAAAATAAATCTCGTGCTCGATGGAGT--TCATTTCC 20129 Query 155981 GTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACAT 156040 |||||||| ||||| || | || || ||||| | ||| ||||| ||||| || Sbjct 20128 ATGATTCTTACGTAGTTCCAGAAACTCAAAGATATCCGCATGCCAGGGCTCTAGATAAAT 20069 Query 156041 AGCAAAACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAA 156097 |||||| || |||| ||| ||||| ||||| || || ||||| || | |||||| Sbjct 20068 TGCAAAAGACCCTTTCCGCTTCCCACCACCTTGATCAACGTATCGAGCTGTGTCATTGAA 20009 Query 156098 GACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACC 156157 || | ||||| |||| ||| ||||| ||| | ||||| || |||||||||| ||| Sbjct 20008 CACCCGAAGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATAT---AACT 19952 Query 156158 A---GATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTG 156214 | ||||||| ||| |||| | |||||||| || | ||| || ||||| Sbjct 19951 GTTGGTGGAGCGAATATTGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATACA 19892 Query 156215 AGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAG 156274 || |||| || | || | | |||| || || ||||||||||||| ||| |||| ||| Sbjct 19891 CGCACATTGTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATAG 19832 Query 156275 ATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATG 156334 | | ||||| |||||| ||||| || ||||| || ||||| || || || |||||||| Sbjct 19831 AAAACACGACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCATG 19772 Query 156335 AATAAAATACTTATTAGACATATAATCGTATGTCTCC 156371 |||| |||| | ||||| | || || || ||| Sbjct 19771 CGTAAAGAACTTTTGTGACATGTGTTCATACGTTTCC 19735 >seq2372 Length=35131 Score = 93.3 bits (102), Expect = 1e-13 Identities = 177/258 (69%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGA-TGCGTCATATAG 251462 || |||| ||||| ||| ||| || || |||| ||| ||||| || | || || ||| Sbjct 17962 GCAATAATTCCACAGATATCACAAACGTGAACGCGGTACGCATCCGAATTCG-CAAATAA 18020 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 ||| || | ||| | || ||||||||||||| |||||| |||||||||||||| Sbjct 18021 TCGATCCATTAGGAAATTCGCTGATCCGTGTGAAATCAAACAATCTCGCTCCATTTCACC 18080 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 | ||| | || || || || || || ||||| || || || || || | || Sbjct 18081 CATACGTAACCCTCCTTCCCGGGCTCTTCCCTCCATCGGTTGTCGCGTTAGCATTGTCAC 18140 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 |||||| || || ||| ||||||| |||||||| || | ||||| ||||| Sbjct 18141 TGGACCGCGAGACCGCGAGTGTATTTTATCATCAACCATATGTTTTAACCGCTGATAGAA 18200 Query 251643 TGCGGGACCGATGAAGAT 251660 || || || ||||| || Sbjct 18201 TGTCGGTCCAATGAAAAT 18218 >seq2701 Length=117590 Score = 91.5 bits (100), Expect = 4e-13 Identities = 201/299 (67%), Gaps = 7/299 (2%) Strand=Plus/Plus Query 288964 TGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtt 289023 |||||||| || | ||| |||||||||||| |||| | | ||| | ||| ||| Sbjct 20273 TGATTAAGAGTGTTTTCTCTTTCATCATTTCCACCTGAGAACTGGCCC---TTGCTTCTT 20329 Query 289024 tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 | | |||||||||| || ||||| ||||| | | || || | ||| || || Sbjct 20330 GTGCGAGCAACAGCATCGATCTCGTCGATGAAGACAATGCAGGGCGCGTTTGCTCGAGCT 20389 Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 | ||| || |||| ||||| |||| || | || ||| |||| || | ||| || Sbjct 20390 TCTCGAAACAAGTCTCGCACACGTGATGGACCCACCCCCACAAACATCTCAATAAAATCG 20449 Query 289144 GAAGCG--GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAA 289201 ||| || |||||| || || | || | || || ||||| ||| ||||||||| Sbjct 20450 GAACCGGAGATACTGTAA--AACGGAACGCTGGCCTCTCCTGCAGTAGCCTTCGCCAGAA 20507 Query 289202 GTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA 289260 | || || || ||||| ||||| || | | || |||| ||||| | |||||| ||| Sbjct 20508 GCGTTTTTCCGGTTCCTGGTGGACCAACAAGTAATGCTCCTTTTGGAATTTTTGCACCA 20566 >seq1629 Length=81605 Score = 84.2 bits (92), Expect = 6e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 353971 TGAGATATAATAATCACACCCCCAAGATAGCTCTTAATTGCTGTGGCGAGAGCACCAAGC 354030 || || || |||| ||||| ||| | || || ||| || | || |||||||| || Sbjct 63613 TGTGAGATCATAACAACACCTCCACCAAAGTTCACAATAGCGGCAGCAAGAGCACCCAGT 63554 Query 354031 GAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACGTGCGGCTCCATCCAC 354090 || || || || || |||| || ||||||||||||| | |||||| || || |||| Sbjct 63553 GAATCGCGATCCAGATAATTCGTTGGTTCGTCAAGGACTAAAACGTGAGGAAACAGCCAC 63494 Query 354091 ATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 || ||||| | || || | ||| || ||||| || || ||||| Sbjct 63493 ATGGCTGCTCCAAGGACCAACTTGACTTTCTGACCACCGGATAG 63450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471746978052065