Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq25 187 5e-42 seq3359 120 6e-22 seq655 104 5e-17 seq821 95.1 2e-14 >seq25 Length=104834 Score = 187 bits (206), Expect = 5e-42 Identities = 171/216 (79%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||||| || ||||||||||| || || ||||| | ||| | | || Sbjct 78434 ACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGAGTACGTCC 78493 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||||||||||||||||||| ||||| || | ||| ||||| ||||| |||||||| || Sbjct 78494 GTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTT 78553 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||||| || |||||||| || ||||| || || || ||||||||||| || Sbjct 78554 GTCTTGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAAAGTGAT 78613 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | ||| || ||||| |||||||| Sbjct 78614 GGTCTTTCCAGTAAGCGTTTTCACAAAAATCTGCAT 78649 Score = 167 bits (184), Expect = 5e-36 Identities = 167/217 (77%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||||| || ||||||||||| || || ||||| | || ||| || Sbjct 78206 ACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGCGTTCGTCC 78265 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| |||||||| || ||||| ||||| | ||| || |||||||| |||||||| || Sbjct 78266 GTCTTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAGGAATTCCTTCTTT 78325 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| || || ||||| || || ||||| || ||| |||||||| || || Sbjct 78326 GTCCTGGATCTTCGCCTTCACATTGTCGATAGTATCTGAAGATTCCACTTCCAACGTAAT 78385 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || |||| |||||| ||||| || |||||| Sbjct 78386 AGTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCATT 78422 >seq3359 Length=441171 Score = 120 bits (132), Expect = 6e-22 Identities = 114/143 (80%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 |||| | | ||||||||| ||||||||||| ||||| ||||| | |||||| || ||||| Sbjct 430359 TAGAGTACGACCGTCTTCAAGTTGTTTTCCGGCAAAAATTAGACGTTGTTGGTCAGGAGG 430300 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCTA 82761 ||||||||||| ||||||||| ||||| || ||||| |||||||| || | ||||| Sbjct 430299 AATTCCTTCCTTGTCTTGAATC-TTGCTCTTGACATTGTCAATCGTGTCCGCTGATTCTA 430241 Query 82762 CTTCCAAAGTTATCGTCTTGCCT 82784 |||| | || || || || ||| Sbjct 430240 CTTCGAGTGTAATTGTTTTTCCT 430218 >seq655 Length=45005 Score = 104 bits (114), Expect = 5e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 |||| || || || ||||| | || ||| ||||| || | ||||||||| || || | Sbjct 27415 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 27474 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 | | | ||||| || ||||| ||||||||||| ||||||||||| || || ||||| | Sbjct 27475 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 27534 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 | || || || | ||| || || | ||| || || || || || | || || || | Sbjct 27535 CGATGGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTTTTGACGA 27594 Query 82801 ATATCTGCATTATTA 82815 | ||||||||| ||| Sbjct 27595 AAATCTGCATTCTTA 27609 >seq821 Length=42298 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| |||||||||||| | || ||||| || ||||||||| | || || Sbjct 35823 ATACCTTCCTTGTCTTGAATCTTTCCCTTCACATTATCGATCGTATCAGCCGACTCCACG 35764 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || |||||||| || || || ||||| ||||| |||||||| Sbjct 35763 TCCAATGTGATCGTCTTCCCGGTTAAAGTCTTGACAAAAATCTGCAT 35717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981780089169555