Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2423 168 2e-36 seq3629 98.7 2e-15 seq1278 93.3 1e-13 seq3163 87.8 4e-12 >seq2423 Length=50609 Score = 168 bits (186), Expect = 2e-36 Identities = 425/640 (66%), Gaps = 16/640 (3%) Strand=Plus/Plus Query 110271 ATTATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGT 110330 ||||||| | ||| | |||| |||| ||||||||||| || |||||||| || Sbjct 19577 ATTATCGGTGATA---GAGACTTTGATTACGACTATTTTGGCTTTAAAACTCTGGAGAAA 19633 Query 110331 GCTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGT 110390 | ||| | | ||||| ||||| | | |||||| || ||||| ||| | | || Sbjct 19634 TCGTATCTGTTGCGTGTGAATGGAAAAGTGTGTGAACGCCCACAACATATGATAATGCGA 19693 Query 110391 GTTGCGATTGGTATTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTATTA 110450 || || | || || || | | || | | || ||| | ||| ||||| | Sbjct 19694 GTGGCTGTCGGCATACACAAAGAGAATTTGGATGCCGTTTTGGAAACGTATGAACACAT- 19752 Query 110451 AGTAAAAAGAAAGCTATT----CATGCTACTCCTACCCTATTTAACGCAGGAACTAATGG 110506 || | || ||| | || ||||| ||||| || || || || || ||||| | | Sbjct 19753 -GTCACAA--AAGTTCTTTACGCATGCAACTCCGACGCTTTTCAATGCGGGAACGCCTCG 19809 Query 110507 AGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTA 110566 | ||||| | || || ||||| || || | ||||||||||| || || ||||| Sbjct 19810 ACCCCAATTATCGTCGTGTTTTCTATTATCCATGCAAGATGATTCTATCGACGGCATTTA 19869 Query 110567 TGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGT 110626 || | || ||| || ||| |||||| || |||| || ||||| | | Sbjct 19870 CGACACGCTGAAACAATGTGCGTGTATTTCAAAGTGGGCTGGCGGTATTGGCGTCAGTAT 19929 Query 110627 TCATGATATTCGCTCAAA-AGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGAC 110685 | |||||||||| | | || | |||| | |||| || ||| | |||| Sbjct 19930 TTCCAATATTCGCTCCACCAACAGTTATATTCGCGGGA-CGAATGGAAGTTCGAATGGAA 19988 Query 110686 TTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---A 110742 ||||||||||| | | || ||||| ||||| || ||| || ||||||||||| | Sbjct 19989 TTGTTCCAATGCTTCGGGTGTTCAATGACACAGCTCGATACGTTGATCAAGGTGGTGGGA 20048 Query 110743 AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCT 110802 || | || || || ||||| || ||||| || || |||||| | ||||| ||||| || Sbjct 20049 AGCGGAAAGGGTCTTTTGCAATTTATCTAGAGCCCTGGCATGCGGATATCTTTGAGTTTC 20108 Query 110803 TAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAA 110862 | ||||| ||||| ||||| ||| |||| || ||||||| |||||||||||||| Sbjct 20109 TGGAACTACGTAAGAATCATGGAAATGAACTCCATCGAGCACGAGATTTATTTTATGCTC 20168 Query 110863 TGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAA 110902 | ||||| | ||| | || ||||||||||| |||| || Sbjct 20169 TTTGGATCCCCGATCTGTTTATGAAACGTGTGGAAGACAA 20208 >seq3629 Length=149247 Score = 98.7 bits (108), Expect = 2e-15 Identities = 376/584 (64%), Gaps = 20/584 (3%) Strand=Plus/Minus Query 131433 TATTTCCAATTAAACATCACGATGTTTTCGATATGTATAAGAAATCTGTTGCGGCCTTCT 131492 ||||||| || |||| || ||| || |||||||||||| | | || ||| | Sbjct 31514 TATTTCCGATACAACAATCTGAGATTTGGGACATGTATAAGAAAGCAGAGGCAAGCTTTT 31455 Query 131493 GGACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATTAACCTTGA 131552 |||| | ||||| |||||| || | || || |||| ||| || || | | Sbjct 31454 GGACCGCAGAAGAAATCGATTTGGTGCATGACATGAATGACTGGCTTAATATATCGGACA 31395 Query 131553 ATGAAAAAGATTTTGTTTCCAAA---GTTCTTGCATTCTTCGCCGGAAGTGATGGCATTG 131609 |||| | | | ||| | |||| || | || ||||| || | |||||||| |||| Sbjct 31394 ATGAGAGACACTTTAT---CAAACACGTGTTGGCCTTCTTTGCAGCCAGTGATGGGATTG 31338 Query 131610 TTATTGAAAATCTTGTTATTAATTTCATTCAAGAAATTGATATTCCTGAAGTAACATCGT 131669 ||| ||||||||| | || ||||||| || || | || || |||| || | Sbjct 31337 TTAATGAAAATCTCGCCATGAATTTCAGCAGTGAGGTTCAAATCCCGGAAGCTCGATGCT 31278 Query 131670 TCTACACATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATTATTGATTG 131729 | || ||| ||| || | ||| ||| || || ||||||| |||||||||| Sbjct 31277 TTTATGGATTCCAAATTGCAATAGAAAATATACACTCGGAAGTGTATTCGTTATTGATTG 31218 Query 131730 AGAGTCTTGTTAAAAATGAAGATGATAAAAATAAATTATTTGATGCTGTA---AATAAAT 131786 | | | ||| || | || ||| | | ||| | |||| | || ||| Sbjct 31217 ATACATACATCAAAGATCCAACCGAAAAACAGCATTTACT--ATGCGCGATTGAAACAAT 31160 Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGG----ATTCAAGATGATTCC 131842 | ||| ||| || |||||| ||||||| | |||||| || ||| | || || Sbjct 31159 CCCGTGCG-TTACCAATAAAGCACAATGGGCGTTGAAATGGTGCGATCCAAAGT-ATGCC 31102 Query 131843 GCTAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGT 131902 | ||| | |||| | ||||| ||||| || ||||| || || || || || Sbjct 31101 TCG---TTTGCAGAAAGAGTGGTAGCCTTTGCGGCCGTCGAAGGAATCTTTTTCTCCGGA 31045 Query 131903 GCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCC 131962 | ||||| |||| |||||||| ||||| || ||||||||||||||||| | || || Sbjct 31044 TCATTCTGCTCTATATTTTGGCTGAAGAAACGAGGATTGATGCCTGGACTTTGCTTTTCA 30985 Query 131963 AATCAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGC 132006 ||| | ||||| | ||||||| | | ||| ||| ||||| Sbjct 30984 AATGAGCTCATCAGTCGTGATGAAGGACTACATTGTGACTTTGC 30941 >seq1278 Length=157317 Score = 93.3 bits (102), Expect = 1e-13 Identities = 118/158 (75%), Gaps = 6/158 (4%) Strand=Plus/Plus Query 305334 TGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGT-A 305392 |||||||| | || || || |||| |||||||| || ||||| ||| | ||||| | Sbjct 126110 TGTTCAATCGTCAGCCTTCTTTGCACAAAATGTCAATCATGGCACATCGGGCGAAAGTCA 126169 Query 305393 TTATCTGGATTGACATTTCGATTAAATGTAAGTGC--TTGTACGCCTTATAATGCGGATT 305450 | ||||| || ||||| || |||| ||||| ||| |||| |||||||| |||| Sbjct 126170 TGCCCTGGAGA-ACTTTTCGTTTCAATG--AGTGCGTTTGCTCGCCCTATAATGCCGATT 126226 Query 305451 TTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 | |||||||| |||||||||||||| | || ||| || Sbjct 126227 TCGATGGAGACGAAATGAATATGCACCTGCCACAAACA 126264 >seq3163 Length=31710 Score = 87.8 bits (96), Expect = 4e-12 Identities = 124/168 (74%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383 |||| ||| | || ||| | |||||||| ||||| || |||||||| ||| | || | | Sbjct 21648 GATTTGGTGTTATTTAATCGTCAACCATCTCTGCACAAGATGTCTATCATGTCCCACAGA 21589 Query 305384 GTCAAAGTATTAT-CTGGATTGACATTTCGATTAAATGTAA--GTGCTTGTACGCCTTAT 305440 ||||| || || |||| | |||||||| | || || ||| || | || || Sbjct 21588 GTCAAGGTCTTCCACTGG-TCCACATTTCGTCTCAACTTATCGGTGAC-GT-CTCCCTAC 21532 Query 305441 AATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 ||||| ||||| |||||||||||||||||| ||||||| || || ||| Sbjct 21531 AATGCAGATTTCGATGGAGATGAAATGAATCTGCATGTTCCGCAGTCA 21484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186755853383945