Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq25 134 3e-26 seq655 89.7 1e-12 >seq25 Length=104834 Score = 134 bits (148), Expect = 3e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||||| || ||||| || |||||||||||||| || ||| ||| Sbjct 78646 CAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCTTCAGAC 78587 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| |||||| ||||||||||| |||||||||||| || || ||| Sbjct 78586 ACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAGCAA 78527 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| ||||| || | ||||| ||| | ||| | || ||||||||| || Sbjct 78526 CGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGTACTCTTGCGGATTACAACATC 78467 Query 206353 CAGAAAGAGTCTAC 206366 |||||||| || || Sbjct 78466 CAGAAAGAATCAAC 78453 Score = 107 bits (118), Expect = 5e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || ||||| || ||| ||||||| || |||||||| | || Sbjct 78178 AAGACGCTGACCGGGAAAACTATAACTCTGGAAGTCGAGTCATCTGACACTATTGACAAT 78119 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || |||||||||||| || ||| ||| | || || || Sbjct 78118 GTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGACCAGCAACGTCTAATTTTT 78059 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || ||||||| ||| | || | || ||||||||| | |||||||||||| Sbjct 78058 GCCGGTAAACAACTGGAAGACGGACGAACGCTTGCGGATTACAACATTCAGAAAGAGTCT 77999 Query 206365 ACTCTTCACCTTGT 206378 || ||||| || || Sbjct 77998 ACGCTTCATCTGGT 77985 Score = 104 bits (114), Expect = 6e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || ||||| || || |||||||||||| ||| || || |||| Sbjct 78406 AAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTCAGATACTATCGACAAT 78347 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || |||||||||||| || ||| ||| | || || || Sbjct 78346 GTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGACCAGCAACGTCTAATTTTT 78287 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || ||||||| ||| | || | || ||||||||| |||||||||| || Sbjct 78286 GCCGGTAAACAACTGGAAGACGGACGAACGCTTGCGGATTACAACATCCAGAAAGAATCA 78227 Query 206365 AC 206366 || Sbjct 78226 AC 78225 >seq655 Length=45005 Score = 89.7 bits (98), Expect = 1e-12 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| ||||| || ||||| |||||| | || || ||| || ||| Sbjct 27601 CAGATTTTCGTCAAAACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATCCGAC 27542 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||||||||| || ||||||||| || ||| || Sbjct 27541 ACCATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCAACAG 27482 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | || ||||| ||||| || ||||| || || | || | || ||||||||| || Sbjct 27481 CGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCTCGCGGATTACAACATC 27422 Query 206353 CAGAAAG 206359 || |||| Sbjct 27421 CAAAAAG 27415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181764092914145