Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3629 280 1e-70 seq3502 143 2e-29 >seq3629 Length=149247 Score = 280 bits (310), Expect = 1e-70 Identities = 624/910 (69%), Gaps = 36/910 (4%) Strand=Plus/Minus Query 43684 AGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTA 43743 |||||||||| | |||||| | ||||| || ||| | ||| || ||| | ||||| Sbjct 31537 AGAAAATCCGAACCGCTTTGTCTTATTTCCGATACAACAATCTGAGATTTGGGACATGTA 31478 Query 43744 CAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGC 43803 || |||||| |||| |||||||| ||||||||| | |||||| | ||| | Sbjct 31477 TAAGAAAGCAGAGGCAAGCTTTTGGACCGCAGAAGAAATCGATTTGGTGCATGACATGAA 31418 Query 43804 ACATTGGATTGCATTAAAACC-ACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTT 43861 | ||| || | || | | |||| || | ||| ||||| || ||||| || Sbjct 31417 TGACTGGCTT--AATATATCGGACAATGAGAGACACTTTATCAAACACGTGTTGGCCTTC 31360 Query 43862 TTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA-GAAGT 43920 ||||| || || || ||||| || ||||||||| | | | | ||| ||| || || Sbjct 31359 TTTGCAGCCAGTGATGGGATTGTTAATGAAAATCTCGCCA-TGAATTTCAGCAGTGAGGT 31301 Query 43921 TCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTC 43980 |||| | || ||||| ||||| |||||||| || |||||||| ||||||||||| || || Sbjct 31300 TCAAATCCCGGAAGCTCGATGCTTTTATGGATTCCAAATTGCAATAGAAAATATACACTC 31241 Query 43981 GGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATT 44040 |||| |||| | |||| ||||| |||||||||||| ||| || || | || Sbjct 31240 GGAAGTGTATTCGTTATTGATTGATACATACATCAAAGATCCAACCGAAAAACAGCATTT 31181 Query 44041 GTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAAT 44099 | ||||| |||||| | || |||| ||| |||||||| | ||||| | |||| Sbjct 31180 ACTATGCGCGATTGAAACAATCCCGTGCG-TTACCAATAAAGCACAATGGGCGTTGAAAT 31122 Query 44100 GGATAAATTCAAATGAT---TCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAG 44156 || || |||| || || |||| |||| || | || || ||||| | || |||| Sbjct 31121 GGTGCGATCCAAAGTATGCCTCGTTTGCAGAAAGAGTGGTAGCCTTTGCGGCCGTCGAAG 31062 Query 44157 GCATTTTCTTTTCAGGATCGTT-TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATG 44215 | || || || || ||||| || ||| | ||||||||| | ||||||||||| |||||| Sbjct 31061 GAATCTTTTTCTCCGGATCATTCTGCT-CTATATTTTGGCTGAAGAAACGAGGATTGATG 31003 Query 44216 CCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTT 44275 ||||| | |||||||||||| | || |||||||||||||| ||||||| || ||| Sbjct 31002 CCTGGACTTTGCTTTTCAAATGAGCTCATCAGTCGTGATGAAGGACTACATTGTGACTTT 30943 Query 44276 GCTTGCTTG--TTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAG-ACAATTACA 44332 || || || |||| | | || | | ||||| |||| | | | | ||| Sbjct 30942 GCATGTCTGATGTACTCG--AAACTGGTA---AATAAG-CTTCCAGAAGGCTCTATTCAT 30889 Query 44333 GATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACA-GCATTACCTGT 44391 | || || || || || | || |||||||||||| | || | | || | || || Sbjct 30888 GCAATCATTTCCGACGCCGTTATCATCGAACAAGAATTTGT-ACGAGATTCACTTCCAGT 30830 Query 44392 AAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCG 44451 | |||| ||||||||| | ||||||| ||||| || || | | || ||||| Sbjct 30829 CGAGCTAATTGGAATGAATTCAAGTTTGATGGGTCAATACATCGAGTTTGTGGCGGATCG 30770 Query 44452 TTTACTTTTGGAACTGGGTTGCGATAAACA--CTATAT---TGTACAAAACCCGTTTGAT 44506 || | | ||| | ||| | | || ||||| | | || ||| ||||| Sbjct 30769 ATTGTTACATGCACT---TGGCG-TCAGCAAGTTATATCACGCTTCTAATCCC-TTTGAC 30715 Query 44507 TTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAA 44566 | ||||| | ||||| || |||| ||||||||||||||||| ||||||||||||||| Sbjct 30714 TGGATGGATATGATTTCTCTGCAAGGAAAAACAAACTTTTTTGAGAAACGCGTTGGAGAA 30655 Query 44567 TATCAGCGAA 44576 ||| ||||| Sbjct 30654 TAT--GCGAA 30647 >seq3502 Length=87171 Score = 143 bits (158), Expect = 2e-29 Identities = 220/314 (70%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 41004 CGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCT 41063 |||||||| || || | ||| ||||| ||||| || || |||||||| || || Sbjct 15044 CGACGTATCATCTTATCCGCTTGGAATCCAACCGATTTAGCCGAAATGGCATTACCTCCC 15103 Query 41064 TGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAA 41123 |||||| | | || || ||||||||| ||||| ||| | ||||| ||| |||| || Sbjct 15104 TGTCATCTCATGTGCCAATTTTACGTTGCAAATGGGGAATTATCATGCCAAATGTACCAG 15163 Query 41124 AGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACG 41183 |||| | ||| || || || || || || || || || || || || || || | || Sbjct 15164 CGATCCGCTGATATTGGTCTGGGCGTTCCATTCAATATTGCTAGCTACGCGCTTTTGACA 15223 Query 41184 TATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGAT 41243 | |||||||||||||| || || | |||| || || |||||||| | | |||||| Sbjct 15224 AAAATGATTGCACACGTGACTGATCTCCAACCCGGCGAGTTTGTTCATGTGATCGGAGAT 15283 Query 41244 GGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAGA 41303 | ||||| ||||| |||||| | || ||| || | |||||| ||| | || | Sbjct 15284 GCCCATATCTACATGAATCACTTGGAACCGCTACAGGCACAACTTGAACGCACTCCACGC 15343 Query 41304 CCATTTCCAACGCT 41317 || |||||||| || Sbjct 15344 CCGTTTCCAACACT 15357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397437859238725