Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2423 158 2e-33 >seq2423 Length=50609 Score = 158 bits (174), Expect = 2e-33 Identities = 677/1053 (64%), Gaps = 43/1053 (4%) Strand=Plus/Minus Query 111052 ATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAG--ACTTTCGC 111109 ||| || ||||||||||| || | ||||| |||| |||||| ||| |||| || Sbjct 20701 ATCGGCAAGACCTTGAACGCCGATTCCAATCGGTCGATGTCGCTGATTGCTCACTTGTGC 20642 Query 111110 G-CAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAAT 111168 ||| || |||||| |||| ||||||| | ||| |||||||| ||||| || Sbjct 20641 TTCAGG---AATCGGATAATAATTGAGATCAATGATTTTGTTGAGATTTTTCGTAACGAT 20585 Query 111169 CTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTT 111228 ||||||||||| | | |||| || | | ||| | | | ||| || ||| | || Sbjct 20584 TTTTGTGATTTCGTATAATTTTGCAAACTGAAA--TTC---TTTCTG-ATACACAAATTT 20531 Query 111229 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 111288 || | ||||| || ||||||||||| || ||| || | |||| |||||| | Sbjct 20530 TGACAATGCGATGGAAGCCAAATTGCATACTGCCACTTCTTTGGAGTCTGAGTACTCGAT 20471 Query 111289 AATTTCTGTACATAAGTTG---GAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT 111345 ||||| || | ||| || | ||| || || | ||||| || || || Sbjct 20470 GATTTCACAGCAGAGATTGCTTGATCG---AATGGTTCCAAGATTCTGCTGATTGGATTT 20414 Query 111346 CTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAG 111405 || || || || ||||| ||||| || ||||| || ||||| |||| | | Sbjct 20413 ACGATTACAAGCGTCTTTGTAAAGCATATACGGCGTTCCGGTCTCAATCTGACTATCCAA 20354 Query 111406 AATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTT--GGCCCGTCCCTCCGCCTCG 111463 ||| || ||| | | |||| ||| | | || ||| | | |||| Sbjct 20353 AATGGCAAACCACAATTGCTGGGCTTTGACAGT--CTTTCGGGCAATGTTTTGAGACTCG 20296 Query 111464 TACTTTGTGTAGAGGGCTTCAAACTC-CTCACCCACCGCGTCGGAGAGACCTGGTGCCTT 111522 |||||| || | || ||||| || || |||| | || | || | ||| |||| Sbjct 20295 TACTTTTCATATAACGCATCAAATTCGCTTCCCCATGTC-TCATAAAGTCGTGGAGCCTC 20237 Query 111523 GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGG 111582 || |||||||| | | ||||| || || || || ||||| || || || || Sbjct 20236 GTTCGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACACGTTTCATAAACAGATCGGG 20177 Query 111583 AATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCG 111642 ||||| || | |||| | ||||| ||| ||| | || || || || Sbjct 20176 GATCCAAAGAGCATAAAATAAATCTCGTGCTCGATGGAGTTCATTTCCATGATTCTTACG 20117 Query 111643 TAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC 111702 || || || ||||| | ||||||||| ||||| ||||| ||||| | ||| | ||| || Sbjct 20116 TAGTTCCAGAAACTCAAAGATATCCGCATGCCAGGGCTCTAGATAAATTGCAAAAGA-CC 20058 Query 111703 CTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAG 111756 ||||| ||| ||| |||||| || || || |||||| | || || || ||||| Sbjct 20057 CTTTC--CGCTTCCCACCACCTTGATCAACGTATCGAGCTGTGTCATTGAACACCCGAAG 20000 Query 111757 CATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCT 111816 |||||||| ||| |||| || ||||| ||||| |||||| | || ||| | Sbjct 19999 CATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAACTGTTGGTGGAGCG 19940 Query 111817 CACATCATGGATGTGC--ATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCC 111874 | || |||| | | | |||||||| |||||||||||||| || |||||| | Sbjct 19939 AATAT--TGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATACACGCACATTGT 19882 Query 111875 GTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTG 111934 | || || | || || |||| ||| || || || | ||| | || || || Sbjct 19881 TTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATAGAAAACACGAC 19822 Query 111935 GACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTG---AATGAAC 111991 || | || |||| || || || |||||||| || || || ||||| || || |||| Sbjct 19821 GATAATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCATGCGTAAAGAAC 19762 Query 111992 ATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATG 112051 | ||| ||||| | || || || ||||| || | ||| | | || ||| ||| Sbjct 19761 TT---TTGTGACATGTGTTCATACGTTTCCAAAACGGCATCCAAATTCTCTTTGTGTATG 19705 Query 112052 CCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 |||| || || ||||| | ||| | |||||| Sbjct 19704 CCGACAGCCACTCGCATTATCATATGTTGTGGG 19672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628002600252000