Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2423 156 5e-33 >seq2423 Length=50609 Score = 156 bits (172), Expect = 5e-33 Identities = 634/985 (64%), Gaps = 47/985 (5%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 |||||| | ||| | ||||| ||||| |||| || || || | | ||| | || Sbjct 19672 CCCACAACATATGATAATGCGAGTGGCTGTCGGCATACACAAAGAGAATTTGGATGCCGT 19731 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATT---CACGCAACACCAACCCT 104337 ||||| || || || | ||||| ||| | |||| || || ||||| || || || Sbjct 19732 TTTGGAAACGTATGAACACATGTCACAA---AAGTTCTTTACGCATGCAACTCCGACGCT 19788 Query 104338 CTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 104397 |||||||| || || || |||||||| | || || || || | ||| | || Sbjct 19789 TTTCAATGCGGGAACGCCTCGACCCCAATTATCGTCGTGTTTTCTATTATCCATGCAAGA 19848 Query 104398 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 104457 || || ||| |||| || || | || || | | |||||| || ||||||||||| Sbjct 19849 TGATTCTATCGACGGCATTTACGACACGCTGAAACAATGTGCGTGTATTTCAAAGTGGGC 19908 Query 104458 TGGGGGTATTGGGAT--GCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 104515 ||| |||||||| | | | |||| || | | ||| || | |||||| ||| Sbjct 19909 TGGCGGTATTGGCGTCAGTATTTCCA--ATATTCGCTCCACCAACAGTTATATTCGCGGG 19966 Query 104516 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 104575 || ||||| || |||| ||| ||||||||||||| || || || | |||||| || Sbjct 19967 ACGAATGGAAGTTCGAATGGAATTGTTCCAATGCTTCGGGTGTTCAATGACACAGCTCGA 20026 Query 104576 TATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCA 104629 || || |||||| ||| ||| ||||||| ||| | ||| | ||||| ||||| Sbjct 20027 TACGTTGATCAAGGTGGTGGGAAGCG--GAAAGGG-TCTTTTGCAATTTATCTAGAGCCC 20083 Query 104630 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCG 104689 ||||| ||||||||| | ||||| || || | ||| || || || | || Sbjct 20084 TGGCATGCGGATATCTTTGAGTTTCTGGAACTACGTAAGAATCATGGAAATGAACTCCAT 20143 Query 104690 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 104749 || || ||| | || | ||||| ||||| || ||||| || ||||| | || || Sbjct 20144 CGAGCACGAGATTTATTTTATGCTCTTTGGATCCCCGATCTGTTTATGAAACGTGTGGAA 20203 Query 104750 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTG 104809 || | | ||| | | || ||||| || |||| || | || | || | | || Sbjct 20204 GACAACCAAGAATGGAGTTTATTCTGTCCGAACGAGGCTCCACGACTTTATGA-GACATG 20262 Query 104810 GGTGAG-GAGTTTGAAGCCCTTTACACAAAGTACGAG--GAAGAAGGTCGGGCGACTGCG 104866 || || || ||||| || | || |||||||||| | || | | ||| | Sbjct 20263 GGGAAGCGAATTTGATGCGTTATATGAAAAGTACGAGTCTCAAAACATTGCCCGA--AAG 20320 Query 104867 ACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926 || || ||| | ||||| || ||| | | ||| | ||||| || || Sbjct 20321 ACTGTCAAAGCCCAGCAATTGTGGTTTGCCATTTTGGATAGTCAGATTGAGACCGGAACG 20380 Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAAT-TTGG---- 104981 || || ||||||||||||||||| ||||| | || ||||| ||||| |||| Sbjct 20381 CCGTATATGCTTTACAAAGACGCTTGTAATCGTAAATCCAATCAGCAGAATCTTGGAACC 20440 Query 104982 GTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGA---CAAAGATG 105038 | ||||||| ||||||||| |||||| | || | |||| |||||| | Sbjct 20441 ATTCGATCAAG-----CAATCTCTGCTGTGAAATCATCGAGTACTCAGACTCCAAAGAAG 20495 Query 105039 AGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAA 105098 ||| || || || | || || ||||| | | || | |||| ||| | || Sbjct 20496 ---TGGCAGTATGCAATTTGGCTTCCATCGCATTGTCAAAATTTGTGTATC-----AGAA 20547 Query 105099 AGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACA 105158 ||| |||| | | || |||| | ||||| | || |||| || || ||||| || |||| Sbjct 20548 AGA-ATTTCAGTTTGCAAAATTATACGAAATCACAAAAATCGTTACGAAAAATCTCAACA 20606 Query 105159 GAGTTATTGATAGAAATTTTTACCC 105183 | | |||||| |||| ||| || Sbjct 20607 AAATCATTGATCTCAATTATTATCC 20631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583233496103800