Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2423 138 1e-27 seq3452 116 4e-21 seq707 109 6e-19 >seq2423 Length=50609 Score = 138 bits (152), Expect = 1e-27 Identities = 255/374 (68%), Gaps = 0/374 (0%) Strand=Plus/Plus Query 53264 CAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAG 53323 ||||||| ||||||||| || || || || || ||||| || || ||| || || || Sbjct 19757 CAAAAGTTCTTTACGCATGCAACTCCGACGCTTTTCAATGCGGGAACGCCTCGACCCCAA 19816 Query 53324 ATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACG 53383 | ||| || || || | | ||| | ||||| || ||||||||||| ||||| ||| Sbjct 19817 TTATCGTCGTGTTTTCTATTATCCATGCAAGATGATTCTATCGACGGCATTTACGACACG 19876 Query 53384 CTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAAC 53443 || || | ||||| || || |||||| | || ||||| || || || || Sbjct 19877 CTGAAACAATGTGCGTGTATTTCAAAGTGGGCTGGCGGTATTGGCGTCAGTATTTCCAAT 19936 Query 53444 GTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCT 53503 | || | | | || || |||||||| || | ||||||| || || Sbjct 19937 ATTCGCTCCACCAACAGTTATATTCGCGGGACGAATGGAAGTTCGAATGGAATTGTTCCA 19996 Query 53504 ATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAG 53563 ||||| || || ||||| |||| || || ||||| | || |||||||||||||| || Sbjct 19997 ATGCTTCGGGTGTTCAATGACACAGCTCGATACGTTGATCAAGGTGGTGGGAAGCGGAAA 20056 Query 53564 GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTG 53623 ||||| || || || || || ||||| ||||| || || || | |||||||| || || Sbjct 20057 GGGTCTTTTGCAATTTATCTAGAGCCCTGGCATGCGGATATCTTTGAGTTTCTGGAACTA 20116 Query 53624 CGTCTGAATCAGGG 53637 ||| |||||| || Sbjct 20117 CGTAAGAATCATGG 20130 >seq3452 Length=70827 Score = 116 bits (128), Expect = 4e-21 Identities = 186/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 ||| ||||| ||||| | ||| || ||||| || |||||| || || ||||| || || Sbjct 63410 CGTAAAGATATATCGAGGGCTAGCAGCATCTTTTCCACCTTGAAGGCGGGTTCCGAATTG 63469 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || || || | || | |||| ||| |||| || || | | ||| |||| || || Sbjct 63470 ACCTGAAGGATACAGCATATTGATGTTATTGGAACCAACATAGTCCTGCGCCATGTTAAC 63529 Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 ||| || ||||| || ||||| || |||||||| || ||||| ||||| Sbjct 63530 AATAGTAGAGTGCAGCGATGCCTCACCATGATGATACGCTGTATGCTCACTACAATATCC 63589 Query 152208 CGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCAC 152267 |||| ||| || || ||||| ||| | || || ||||||||||| ||| | | || Sbjct 63590 GGCCAGCTGTGCTACTTTCATTTCCTGTGAAAGTTTTTTCTTGAGACATGCGAACAATAC 63649 Query 152268 CTTGCGCTGGGATGGTTTCAAACCGTC 152294 ||| || || |||| |||||| ||||| Sbjct 63650 CTTCCGTTGAGATGTTTTCAACCCGTC 63676 Score = 96.9 bits (106), Expect = 4e-15 Identities = 173/250 (69%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || || || || |||| ||| |||||||| || ||||| ||| || || |||||||| Sbjct 63411 GTAAAGATATATCGAGGGCTAGCAGCATCTTTTCCACCTTGAAGGCGGGTTCCGAATTGA 63470 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || || | || | || | ||| |||| || ||| ||| || |||| ||| ||| Sbjct 63471 CCTGAAGGATACAGCATATTGATGTTATTGGAACCAACATAGTCCTGCGCCATGTTAACA 63530 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTC-CGCCACGTAGCC 117483 || ||| || || ||||||||||| |||||||| || ||||| | || || || Sbjct 63531 ATAGTAGAGTGCAGCGATGCCTCACCATGATGATACGCTGTATGCTCACTACA-ATATCC 63589 Query 117484 CGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCAC 117543 |||||||| || || ||||| || | || || |||||||| || || | | || Sbjct 63590 GGCCAGCTGTGCTACTTTCATTTCCTGTGAAAGTTTTTTCTTGAGACATGCGAACAATAC 63649 Query 117544 CTTGCGCTGA 117553 ||| || ||| Sbjct 63650 CTTCCGTTGA 63659 >seq707 Length=66183 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| ||| |||||||| || |||||| | || |||||||||||| Sbjct 20484 GTGAAAATGTAACGAGGGCTAGCAGCATCTTTCCCACCAAGTATCCGAGTACCGAATTGT 20543 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || ||| || ||| || || || ||||| |||||||| || | Sbjct 20544 CCATTTGGAGACAATAGATTCGTATTATTACTTCCGGTAAAGTCTTGAGCCATATTAATG 20603 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 ||||| || || || || || || ||||||||||| | || ||||| | || || || Sbjct 20604 ATCGTTCCATGCAGACTTGCTTCTCCATGGTGATAAGACGAATGCTCTGATACATAACCG 20663 Query 117485 GCCAGCTGAGCCACCTTCATGTC 117507 || || || ||||| || || || Sbjct 20664 GCGAGTTGTGCCACTTTGATTTC 20686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547190383451000