Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq25 190 2e-43 seq655 134 2e-26 seq3359 102 9e-17 seq2423 91.5 2e-13 >seq25 Length=104834 Score = 190 bits (210), Expect = 2e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| |||||||| ||||| || ||||| ||||| || || |||||| Sbjct 78194 AATGCAAATTTTTGTTAAGACGCTGACCGGGAAAACTATAACTCTGGAAGTCGAGTCATC 78135 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | |||| ||| ||||||| || || |||||||| || ||||||||||||||||| Sbjct 78134 TGACACTATTGACAATGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGACCA 78075 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| |||||||||||||| ||||| ||||| || || | || || || || || || || Sbjct 78074 GCAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGAACGCTTGCGGATTACAA 78015 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || || |||||||| || | |||||||| ||||| Sbjct 78014 CATTCAGAAAGAGTCTACGCTTCATCTGGTGCTTCGTCTTCGTGGTGG 77967 Score = 161 bits (178), Expect = 1e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| |||||||| || || || |||||||| | || || || || Sbjct 78422 AATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTC 78363 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| || | ||| ||||||| || || |||||||| || ||||||||||||||||| Sbjct 78362 AGATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGACCA 78303 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| |||||||||||||| ||||| ||||| || || | || || || || || || || Sbjct 78302 GCAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGAACGCTTGCGGATTACAA 78243 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| || ||||| || | || | || | |||||||| |||||| Sbjct 78242 CATCCAGAAAGAATCAACGTTGCACTTGGTGCTACGTCTTCGTGGTGGA 78194 Score = 136 bits (150), Expect = 5e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || |||||||| || ||||| || ||| | || |||||||| Sbjct 78649 ATGCAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCTTCA 78590 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || ||||| ||||| || ||||||||||| || ||| Sbjct 78589 GACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAG 78530 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || ||||| || ||||| || || | ||||| || || || || || Sbjct 78529 CAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGTACTCTTGCGGATTACAAC 78470 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| || ||||| || | || | || | |||||||| |||||| Sbjct 78469 ATCCAGAAAGAATCAACGTTGCACTTGGTGCTACGTCTTCGTGGTGGA 78422 >seq655 Length=45005 Score = 134 bits (148), Expect = 2e-26 Identities = 143/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || ||||| || || ||||| || || || ||||||||||| || ||| Sbjct 27605 AATGCAGATTTTCGTCAAAACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATC 27546 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| ||||||| || ||||| |||||||| ||||||||||| ||||| Sbjct 27545 CGACACCATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCA 27486 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| | ||||| || || || ||| | ||||| | || || || || || || || Sbjct 27485 ACAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCTCGCGGATTACAA 27426 Query 27585 TGTCCAAAA 27593 ||||||| Sbjct 27425 CATCCAAAA 27417 >seq3359 Length=441171 Score = 102 bits (112), Expect = 9e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 || || || ||||| || || || || |||| || | |||| ||| | ||| || Sbjct 430219 GGAAAAACAATTACACTCGAAGTAGAATCAGCGGACACGATTGACAATGTCAAGAGCAAG 430278 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 ||||| |||||||| ||||||||||| ||||| || |||||||||||||| || || ||| Sbjct 430279 ATTCAAGACAAGGAAGGAATTCCTCCTGACCAACAACGTCTAATTTTTGCCGGAAAACAA 430338 Query 27553 CTCGAGGATGATCGTACCCTA 27573 || || || | |||||| ||| Sbjct 430339 CTTGAAGACGGTCGTACTCTA 430359 >seq2423 Length=50609 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/208 (70%), Gaps = 5/208 (2%) Strand=Plus/Minus Query 80014 TGAATTGGCTTG-----GCCTTTGCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGC 80068 |||||||| ||| || ||| || || || ||||||||||| || |||||||| | Sbjct 21425 TGAATTGGATTGCATCTGCTCTTGGACGTGTTCGGAGATAGTACATTCCTGTCTTGAGAC 21366 Query 80069 CCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGA 80128 | || ||||| |||| | ||||| ||| |||| || | || |||| | ||| Sbjct 21365 CTTTTTTCCATGCGTAGAAATGCATCGAAGTGAGTTTACTGACAGTCGGGTCGGCAATGT 21306 Query 80129 AGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAA 80188 || || || || ||| |||||| ||| | || || ||||| || ||||| || | || Sbjct 21305 GAATATTTAGTGATTGACTCTGACAAATGTACGCTCCTCGATCGGCAGCCATGTCCAAAA 21246 Query 80189 TTGACTTTTGTGGAATTTCCCATACTGT 80216 | | |||||| |||||||| ||||| Sbjct 21245 TCGCCTTTTGCTTGATTTCCCAAACTGT 21218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570283702344400