Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq25 129 5e-25 seq655 127 2e-24 seq3359 82.4 7e-11 >seq25 Length=104834 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || |||||||| || |||| ||||| ||||| || | || Sbjct 78193 ATGCAAATTTTTGTTAAGACGCTGACCGGGAAAACTATAACTCTGGAAGTCGAGTCATCT 78134 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || ||||||||||| || || || || || Sbjct 78133 GACACTATTGACAATGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGACCAG 78074 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCG-ATTACAA 27166 || ||| |||| | ||||| |||||| |||||||| | ||| || || || ||||||| Sbjct 78073 CAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGA-CGAACGCTTGCGGATTACAA 78015 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| || ||||| || | ||| |||| | ||| | || ||||| Sbjct 78014 CATTCAGAAAGAGTCTACGCTTCATCTGGTGCTTCGTCTTCGTGGTGG 77967 Score = 125 bits (138), Expect = 6e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| ||||| ||||| || || || ||| | || ||| | ||||| || | | Sbjct 78651 CCATGCAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCTT 78592 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| |||| || | || || || ||||||||||||||||| || || || |||| Sbjct 78591 CAGACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGATC 78532 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | || ||| | || | ||| || |||||| | |||||| | || || | ||||||| Sbjct 78531 AGCAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGTACTCTTGCGGATTACA 78472 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || || || || || || || ||||| | ||| | || ||||| || Sbjct 78471 ACATCCAGAAAGAATCAACGTTGCACTTGGTGCTACGTCTTCGTGGTGGAAT 78420 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || ||||| || || ||||||| | ||||||||| | || Sbjct 78421 ATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTCA 78362 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || || || ||||||||||| || || || || || Sbjct 78361 GATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGACCAG 78302 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCG-ATTACAA 27166 || ||| |||| | ||||| |||||| |||||||| | ||| || || || ||||||| Sbjct 78301 CAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGA-CGAACGCTTGCGGATTACAA 78243 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || || || || || || ||||| | ||| | || ||||| || Sbjct 78242 CATCCAGAAAGAATCAACGTTGCACTTGGTGCTACGTCTTCGTGGTGGAAT 78192 >seq655 Length=45005 Score = 127 bits (140), Expect = 2e-24 Identities = 143/189 (76%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || ||||| || | || |||||||| || ||| | ||| Sbjct 27604 ATGCAGATTTTCGTCAAAACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATCC 27545 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || ||||||||||| ||||| || || ||||| ||| Sbjct 27544 GACACCATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCAA 27485 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCG-ATTACAA 27166 |||||||| || | ||| || ||||||||||| ||| | ||| || | || ||||||| Sbjct 27484 CAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGC-CGAACGCTCGCGGATTACAA 27426 Query 27167 CATTCAAAA 27175 ||| ||||| Sbjct 27425 CATCCAAAA 27417 >seq3359 Length=441171 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 27024 ATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGAC 27083 ||||| || ||||| ||| | | ||| ||||||| | ||||| || ||||||||| Sbjct 430228 ATTACACTCGAAGTAGAATCAGCGGACACGATTGACAATGTCAAGAGCAAGATTCAAGAC 430287 Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 || ||||| || || || || ||||| ||| |||| | ||||| |||||| | |||||| Sbjct 430288 AAGGAAGGAATTCCTCCTGACCAACAACGTCTAATTTTTGCCGGAAAACAACTTGAAGAC 430347 Query 27144 AGT 27146 || Sbjct 430348 GGT 430350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434898040382400