Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq25 120 2e-22 >seq25 Length=104834 Score = 120 bits (132), Expect = 2e-22 Identities = 168/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| || || || ||||||||| |||||| | || || ||| | Sbjct 78422 AATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTC 78363 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || ||||| || || || || ||||||||||| |||| || Sbjct 78362 AGATACTATCGACAAT--GTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGAC 78305 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTA 27965 |||||||| ||||||||||||| |||||| |||| |||| ||| | ||||| | ||||| Sbjct 78304 CAGCAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGAACGCTTG-CGGATTA 78246 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||| ||||| || ||||| ||||| | ||| | ||||| || Sbjct 78245 CAACATCCAGAAAGAATCAACGTTGCACTTGGTGCTACGTCTTCGTGGTGG 78195 Score = 102 bits (112), Expect = 6e-17 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| || || || || |||||| ||| || | || ||||| | Sbjct 78194 AATGCAAATTTTTGTTAAGACGCTGACCGGGAAAACTATAACTCTGGAAGTCGAGTCATC 78135 Query 27849 CGACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| | | ||||| || || || || ||||||||||| |||| || Sbjct 78134 TGACACTATTGACAAT--GTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGAC 78077 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTA 27965 |||||||| ||||||||||||| |||||| |||| |||| ||| | ||||| | ||||| Sbjct 78076 CAGCAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGAACGCTTG-CGGATTA 78018 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||| || |||||| || | ||| |||| | ||| | ||||| || Sbjct 78017 CAACATTCAGAAAGAGTCTACGCTTCATCTGGTGCTTCGTCTTCGTGGTGG 77967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355846157661615