Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq25 136 3e-27 seq655 125 5e-24 seq821 84.2 1e-11 >seq25 Length=104834 Score = 136 bits (150), Expect = 3e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| ||||| || || || || ||||| || ||||| ||||| || || | Sbjct 78194 AATGCAAATTTTTGTTAAGACGCTGACCGGGAAAACTATAACTCTGGAAGTCGAGTCATC 78135 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| |||| ||| | || | || | | ||||||||||| | || ||||| | Sbjct 78134 TGACACTATTGACAATGTGAAGGCGAAGA-TCCAGGACAAAGAAGGAATTCCTCCAGACC 78076 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || ||| |||| |||||||| |||||||||||||||| ||| || | | ||||||| Sbjct 78075 AGCAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGAACGCTTGCGGATTACA 78016 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || |||||||| || Sbjct 78015 ACATTCAGAAAGAGTCTAC 77997 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| || || ||||| || |||||| | |||||||| || | Sbjct 78649 ATGCAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCTTCA 78590 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | |||| || ||| ||||||||||| | || || ||||| Sbjct 78589 GACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAG 78530 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || || || |||||||| ||||||| ||| ||| | | ||||||||| Sbjct 78529 CAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGTACTCTTGCGGATTACAAC 78470 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || ||||| || || || || || || Sbjct 78469 ATCCAGAAAGAATCAACGTTGCACTTGGT 78441 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| ||||| || || || || ||||| || || | ||||| || || | Sbjct 78422 AATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTC 78363 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| | || ||| | || | || | | ||||||||||| | || ||||| | Sbjct 78362 AGATACTATCGACAATGTGAAGGCGAAGA-TCCAGGACAAAGAAGGAATTCCTCCAGACC 78304 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || ||| |||| |||||||| |||||||||||||||| ||| || | | ||||||| Sbjct 78303 AGCAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGAACGCTTGCGGATTACA 78244 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||| || ||||| || || || || || || Sbjct 78243 ACATCCAGAAAGAATCAACGTTGCACTTGGT 78213 >seq655 Length=45005 Score = 125 bits (138), Expect = 5e-24 Identities = 152/203 (75%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 23600 AATTACTTAA-AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAA 23658 || ||||||| ||||||||||||||| ||||| ||||| || ||||| |||||||| || Sbjct 27616 AACTACTTAAGAATGCAGATTTTCGTCAAAACACTCACCGGGAAAACAATCACTCTTGAG 27557 Query 23659 GTTGACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGT 23717 || || || | ||||| | || ||| | || | || | || ||||| ||||| | Sbjct 27556 GTCGAATCATCCGACACCATCGATAATGTGAAGGCGAAGA-TTCAAGACAAGGAAGGAAT 27498 Query 23718 ACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTT 23777 || || || ||||||||||| || || || || |||||| |||| |||| || || | Sbjct 27497 TCCTCCCGACCAACAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCT 27438 Query 23778 AGGCGATTACAACATACAAAAAG 23800 | ||||||||||| ||||||| Sbjct 27437 CGCGGATTACAACATCCAAAAAG 27415 >seq821 Length=42298 Score = 84.2 bits (92), Expect = 1e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 23712 AGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG 23771 |||| | || || || ||||||||| | || ||||| || |||||| ||||||| | || Sbjct 35873 AGGTATTCCCCCGGACCAACAGCGTCTCATTTTTGCTGGGAAACAATTGGAAGATGGTCG 35932 Query 23772 CACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCG 23831 || |||| ||||||||||| || ||||| ||| |||||| | ||| || | || || Sbjct 35933 AACATTAGCGGATTACAACATTCAGAAAGAAAGCACGTTACATCTGGTTCTACGATTACG 35992 Query 23832 AGGAGG 23837 || || Sbjct 35993 CGGTGG 35998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337994172502460