Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq851 188 2e-42 seq25 134 3e-26 seq3407 123 6e-23 seq655 120 7e-22 seq664 114 3e-20 seq546 111 4e-19 seq3174 109 1e-18 seq132 84.2 5e-11 >seq851 Length=841 Score = 188 bits (208), Expect = 2e-42 Identities = 216/288 (75%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTA-TAGGTACTATATTTTCTATGAT 7499 || ||||||||||| ||||||| ||||| || |||| ||||||| | | ||||||| | Sbjct 752 ACTTTATATTTAATTTTTGGTGCTTTTTCAGG-ATTAGTAGGTACAACACTTTCTATTTT 694 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || | | |||||| | || ||| ||| || || | |||||| ||| | || Sbjct 693 AATTCGTATGGAATTATCACAACCTGGTAATCAGATTTTTATGGGTAATCATCAATTATA 634 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || || || | || || ||||| || ||||||||||| ||| | |||||||| ||| | Sbjct 633 TAATGTAGTTGTAACAGCACATGCGTTCGTTATGATTTTTTTTATGGTTATGCCTGTTTT 574 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 || || ||||| |||||||| || | ||||||||||| || || |||||||||||||| Sbjct 573 AATTGGAGGTTTTGGAAATTGGTTTATACCTTTAATGATAGGAGCCCCTGATATGGCTTT 514 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 ||| || | || |||||||||||||| ||| | || ||||| ||||| Sbjct 513 TCCTAGAATGAATAATATAAGTTTTTGGTTATTGCCTCCTTCTTTATT 466 Score = 113 bits (124), Expect = 1e-19 Identities = 88/104 (85%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||||||||| ||||| || |||||||||||||| | |||||||| ||||| ||||| Sbjct 69 TTCAGGATGACCGAAAAACCAAAATAAATGTTGATATAATATAGGATCACCTCCACCTGA 128 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 |||||| |||| |||||| ||||||||||| ||||| |||| Sbjct 129 AGGATCATAAAAAGAAGTATTTAAATTTCTATCTGTTAATAACA 172 Score = 93.3 bits (102), Expect = 1e-13 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 371385 TAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAGTTTATAGCGCCTAGAAGAGA 371444 |||||| || ||||||| ||| |||| || | || ||| ||||| || |||| | ||| Sbjct 267 TAAACCTGGAGCTCTCATGTTATATATAGTCGAAAGAAAATTTATTGCTCCTAATAAAGA 326 Query 371445 AGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCGACGGAACCGCCGGAGTGAGC 371504 ||| || || | | |||||||||||| ||||||||||| || ||| || || || || Sbjct 327 AGAAATTCCAGATAAATGTAAACTAAAAATTGCTAAATCTACCGAAGGACCTGAATGTGC 386 Query 371505 TACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCGGTTC 371545 | ||| | ||| || || ||||| || || || |||| Sbjct 387 TTGTATACTAGATAAAGGAGGATAAACAGTCCAACCTGTTC 427 >seq25 Length=104834 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| | || |||||||| |||| |||||||| || | ||| Sbjct 78428 ACGAAGACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGAGT 78487 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || |||||||| || || ||||||||||| || ||||| || || || ||||| || Sbjct 78488 ACGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCC 78547 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||| ||||| ||| ||| ||||| |||||||| | || || || || Sbjct 78548 TTCTTTGTCTTGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAA 78607 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| ||||| || || | ||||| Sbjct 78608 AGTGATGGTCTTTCCAGTAAGCGTTTT 78634 >seq3407 Length=1843 Score = 123 bits (136), Expect = 6e-23 Identities = 120/152 (79%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 7726 TTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTT 7785 |||| || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| Sbjct 1354 TTTCAAGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTT 1295 Query 7786 ATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAA 7845 | | || |||||| || |||||| ||| ||||||||| ||||| | ||||| ||| Sbjct 1294 GTGTAGACTCCCGTCAATTCCTTTGAATTTCAACCTTGCGATCGTACTTTTCAGGCGGAG 1235 Query 7846 T-ATTTACGCGTTAGCTTAATTAATATAAAAA 7876 | || ||||||||||| ||| || |||||| Sbjct 1234 TGCTTAACGCGTTAGCTGTATT-ATCTAAAAA 1204 Score = 111 bits (122), Expect = 4e-19 Identities = 89/105 (85%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGCCCAAGTCTTCTAAAAG-GGCA 6824 |||| |||| ||||||||||||||||||||| ||||||||||| || ||||| |||| Sbjct 672 TTGAAAGAACGATCAGCCACATTGGGACTGAGAAACGGCCCAAACTTTTTAAAAAAGGCA 731 Query 6825 GCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 |||||| |||| || ||||||| |||||||||||||| || ||| Sbjct 732 GCAGTGAGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAAT 776 >seq655 Length=45005 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 ||||||||| |||||||| || | |||| || || || | || || || ||||| | Sbjct 27415 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 27474 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | | || ||||||||||| ||||| |||||||||||||| ||||| ||||||| | Sbjct 27475 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 27534 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 |||||||||| || | ||| || || | ||||| || || || || | ||||| | || Sbjct 27535 CGATGGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTTTTGACGA 27594 Query 225704 ACACTTGCATT 225714 | | |||||| Sbjct 27595 AAATCTGCATT 27605 >seq664 Length=1758 Score = 114 bits (126), Expect = 3e-20 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||||||||| || |||||||| || || ||||| ||||| ||||| || Sbjct 1309 GAAAATTTGACCATCAGTAATTGAAATAACATTAGTTGGTATATATGCAGATACATCTCC 1250 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATTT 4587 |||||| ||||| | || |||||| ||||||| || |||| || | ||||||||| Sbjct 1249 TGCTTGAGTTTCTATAATAGGTAAAGCTGTTAAAGAACCACTTCCCATTTTTTTATTT 1192 >seq546 Length=4094 Score = 111 bits (122), Expect = 4e-19 Identities = 89/105 (85%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGCCCAAGTCTTCTAAAAG-GGCA 6824 |||| |||| ||||||||||||||||||||| ||||||||||| || ||||| |||| Sbjct 1852 TTGAAAGAACGATCAGCCACATTGGGACTGAGAAACGGCCCAAACTTTTTAAAAAAGGCA 1793 Query 6825 GCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 |||||| |||| || ||||||| |||||||||||||| || ||| Sbjct 1792 GCAGTGAGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAAT 1748 >seq3174 Length=494 Score = 109 bits (120), Expect = 1e-18 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 372623 AGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTG 372682 |||||| ||| ||| |||||| ||||||||||| |||||||||||||||| ||||| | | Sbjct 357 AGGTGTCACAAAATTGAGGGTTGCGACTGTTTAATAAAAACACAGGACTCTGCTAAATGG 298 Query 372683 TAAAACGATGTATAGGGTCTGACAC 372707 ||| | ||||||||||||||||||| Sbjct 297 TAACATGATGTATAGGGTCTGACAC 273 >seq132 Length=1010 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 371784 TTTTGGTAGGCTCTTTATCCTTAACTGGATTTCCGTTTTTGACCGGTTTCTATTCTAAAG 371843 |||| |||| |||||||| |||| |||||||| ||||| | ||||| |||||||||| Sbjct 490 TTTTAATAGGTTCTTTATCTTTAATAGGATTTCCTTTTTTAAGTGGTTTTTATTCTAAAG 431 Query 371844 AAGTAGTTTTAGAGATAGCATTTTCTAAGTTTTCGATTAATA-GtttttttATTTATTGA 371902 | || | ||||| ||||| |||||| |||||| ||| | || |||| |||||| Sbjct 430 ATTTAATATTAGAAATAGCTTTTTCT-AGTTTTAATATAACAGGTCATTTTGCTTATTGG 372 Query 371903 TTA 371905 ||| Sbjct 371 TTA 369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192473978999030