Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2423 342 7e-89 seq3629 246 4e-60 >seq2423 Length=50609 Score = 342 bits (378), Expect = 7e-89 Identities = 1445/2254 (64%), Gaps = 56/2254 (2%) Strand=Plus/Minus Query 76811 TGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCT 76870 ||| || ||||||||||| || || || ||||| ||||| ||||||||||||| Sbjct 21397 TGTTCGGAGATAGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGA 21338 Query 76871 TGTCAGTTTGGAATAAC--TAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCG 76928 || ||||| | | || | || ||||| || |||||||| | || ||||| ||| Sbjct 21337 AGTGAGTTT--ACTGACAGTCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAA 21280 Query 76929 ATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATA 76988 ||| | ||||||| ||| || ||||| | | ||| | |||||| |||||||||| Sbjct 21279 ATGTACGCTCCTCGATCGGCAGCCATGTCCAAAATCGCCTTTTGCTTGATTTCCCAAACT 21220 Query 76989 GTTTTGAAAACTTGTTTGATATCATCTGGAAGGTTTG---TATTTTGAATGGAACCACCA 77045 |||||| | || ||| | || | |||| | | ||||||| | |||||| | | Sbjct 21219 GTTTTGTACTTTTCTTTCACATGAGAAGGAATTTCAGCGATATTTTGTACGGAACCGCGA 21160 Query 77046 TCTGATATAATTGTATTCTTTATATCATCAT-TCCACAATTTCCTCTCTGTTAAAACTCT 77104 || | ||| |||| | || | || ||||||| ||| |||| | || |||| Sbjct 21159 TCGCGAAGGATTTGATTCCGAACGTC-TGATGTCCACAAATTCATCTCAAT--AAGCTCT 21103 Query 77105 A--AGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATA 77162 | ||||| || || ||| ||||||||||| | || | ||| || | || Sbjct 21102 TCCATGAGATATTTGTTGACAATTGTAAATTCTCCAGCGAGGACGCGTCGATTGAACATG 21043 Query 77163 TTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTT 77222 || || | || || | ||| || || || | ||||||||| || || || ||| Sbjct 21042 TTGGAAGTGAACGGCTCGATAGACTCGCAATTGCCGAGAATTTGAGCCGTTGAGGCGGTT 20983 Query 77223 GGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGA 77282 ||||| || || | || ||| |||| || || || || | || ||||| | Sbjct 20982 GGCATCGGAGCGAGCAGCAAAGAGTTTCGGATTCCGTGAGTAGCTACTTGCTCTTTCAAC 20923 Query 77283 TATTTCCAATCCCAAAGATCTGAA---GGTACAACATCCCAAAGATCGTATTGTAGAATT 77339 | ||||||||||| || | ||| || | || | ||| | ||| |||| | || Sbjct 20922 TGCTTCCAATCCCATCGACCGGAATCGGGAATGACCTGCCACATATCAAATTGAAAGATA 20863 Query 77340 CCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAG--CTAGTT 77397 || |||| | ||||||| ||| | || || ||||| ||| | | | | || Sbjct 20862 CCTCGACTAACTGGTGATCCAGCATAGCTCTCGTACGGTCCGA--GTTCCCGTGCCAATT 20805 Query 77398 CACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTT 77457 | ||||||| || || |||| || ||||| ||||| | || ||||| || Sbjct 20804 CCATGGAAGCTTCCATCGCCGCGAAATACATCGTTTCAAAAATTTCTTTGTTGAGCTCGC 20745 Query 77458 GTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAA 77517 | || | | || ||||| ||| | | || | ||| | ||| || | || |||| Sbjct 20744 GAGCAGCTTTGCTTTCAAATGGAAGACTCATCAGTAAAAACGTATCGGCAAGACCTTGAA 20685 Query 77518 CTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAAT 77577 | || || ||||| |||| ||||| || |||| | || ||||| ||||| ||||||| Sbjct 20684 CGCCGATTCCAATCGGTCGATGTCGCTGATTGCTCACTTGTGCTTCAGGAATCGGATAAT 20625 Query 77578 AATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTT 77637 |||| | || || ||||| ||||||||| | ||| | ||| | || | || || Sbjct 20624 AATTGAGATCAATGATTTTGTTGAGATTTTTCGTAACGATTTTTGTGATTTCGTATAATT 20565 Query 77638 TAAGAAAATCAAATCTTCCATCTATAACAAACATGTT--CAAAGCTATAGATGCTAGATT 77695 | ||| | |||| || ||| ||| | || || ||| || || || || | ||| Sbjct 20564 TTGCAAACTGAAAT--TCTTTCTGATACACAAATTTTGACAATGCGATGGAAGCCAAATT 20507 Query 77696 ACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACA 77755 || ||||| || || || | || | || | || || || || ||||| || | Sbjct 20506 GCATACTGCCACTTCTTTGGAGTCTGAGTACTCGATGATTTCACAGCAGAGATTGCTTGA 20447 Query 77756 TTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAAT 77815 | || || || ||||| || || ||| || ||| || | ||| || ||||| || Sbjct 20446 TCGAATGGTTCCAAGATTCTGCTGATTGGATTTACGATTACAAGCGTCTTTGTAAAGCAT 20387 Query 77816 AAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTT 77875 | |||| || ||||| |||||||| || | ||| | || || || | ||| Sbjct 20386 ATACGGCGTTCCGGTCTCAATCTGACTATCCAAAATGG-----CAAACCACAATTGCTGG 20332 Query 77876 --TATCATAGATTTGTATCGC-CTCTCTCTT-----TCATATTGAGTATATAGCCGTTCA 77927 | | | || || ||| | | | || || || | ||||| | ||| Sbjct 20331 GCTTTGACAGTCTT---TCGGGCAATGTTTTGAGACTCGTACTTTTCATATAACGCATCA 20275 Query 77928 AATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAG 77987 ||||| |||||| |||| | || || || || || || | || ||| Sbjct 20274 AATTCGCTTCCCCATGTCTCATAAAGTCGTGGAGCCTCGTTCGGACAGAATAAACTCCAT 20215 Query 77988 TCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGA 78047 || | || | || ||||||||||| ||||| || ||||| |||||| ||||| | Sbjct 20214 TCTTGGTTGTCTTCCACACGTTTCATAAACAGATCGGGGATCCAAAGAGCATAAAATAAA 20155 Query 78048 TCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATA 78107 ||||| | || ||| ||||||||| |||||| || || |||||||| | ||| Sbjct 20154 TCTCGTGCTCGATGGAGTTCATTTCCATGATTCTTACGTAGTTCCAGAAACTCAAAGATA 20095 Query 78108 TCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGA 78167 || | |||||| || |||||||| ||||| | | || || || ||| || ||| Sbjct 20094 TCCGCATGCCAGGGCTCTAGATAAATTGCAAAAGACCCTTTCCGCTTCCCACCACCTTGA 20035 Query 78168 TCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTT 78227 || | |||| || |||| ||| | || | | |||||||| ||| || || || || Sbjct 20034 TCAACGTATCGAGCTGTGTCATTGAACACCCGAAGCATTGGAACAATTCCATTCGAACTT 19975 Query 78228 CCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATT 78287 ||||| || || ||||||||| | | ||||||||| ||| | || || Sbjct 19974 CCATTCGTCCCGCGAATATAACTGTTGGTGGAGCGAATATTGGAAATACTGACGCCAATA 19915 Query 78288 CCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATA 78347 || || ||| ||| || || || || |||||| || ||||| || || || ||| Sbjct 19914 CCGCCAGCCCACTTTGAAATACACGCACATTGTTTCAGCGTGTCGTAAATGCCGTCGATA 19855 Query 78348 CTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCA 78407 ||||| |||| | |||||||| || | ||| | || ||||| ||| Sbjct 19854 GAATCATCTTGCATGGATAATAGAAAACACGACGATAATTGGGGTCGAGGCGTTCCCGCA 19795 Query 78408 TTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCA 78467 || || | ||||||| |||||||||||| | |||| || | | | || ||||| Sbjct 19794 TTGAAAAGCGTCGGAGTTGCATGCGTAAAGAACTTTTGTGACATGTGTTCATACGTTTCC 19735 Query 78468 ATAGCTG-ATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTG 78526 | | | | || | | || | ||| || || || || || || ||||| | |||||| || Sbjct 19734 AAAACGGCATCCAAATTCTCTTTG-TGTATGCCGACAGCCACTCGCATTATCATATGTTG 19676 Query 78527 AGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAA 78586 || | |||| | || ||| | ||||| || ||||| |||| ||||||||| Sbjct 19675 TGGGCGTTCACACACTTTTCCATTCACACGCAACAGATACGATTTCTCCAGAGTTTTAAA 19616 Query 78587 ACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTT 78646 |||||||||| ||| ||||||||| || ||||| | ||||| || ||||| Sbjct 19615 GCCAAAATAGTCGTAATCAAAGTCTCTATCACCGATAATGGCGGAATTGAGAGCTTCTTT 19556 Query 78647 GTATTTGGTAACAATATCCATG-ACAGTAGTTG--AAATAATAGGAGATCGTACACCATT 78703 || | ||||||| || ||| ||| | |||| | |||| |||| |||| | Sbjct 19555 GTTCTCCATAACAAT-TCGATGCACA-TCGTTGGCGATTAAT-GGAGCGGGTACTTTGGT 19499 Query 78704 --TTTAG-GATTAACATAGTTAAATAAATCTTCCATTACATCACTAAATAGtttttttGT 78760 ||| | | ||| | || |||||| || || ||||| || | ||| ||||| Sbjct 19498 GGTTTCGTGCTTATTTTCGTAAAATAA---TTGAATGTTTTCACTGAAGACTTTGTTTGT 19442 Query 78761 TTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATGTTG 78820 | || |||| ||| || | ||| |||| ||||| | | | |||| |||||||| Sbjct 19441 ATTTTTATGTAAATTGGAAATAGCAATTCGAGCAGCCAATTTGGAGAAATCGGGATGTTG 19382 Query 78821 TGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTTGTGACCCC 78880 ||| | || ||||| ||||||| || || || || || || ||||| || Sbjct 19381 TGTGCTGCAGTAAGCTGCGGTTTCTGCTGCCAATTCGTCCAATTCCGATGTGGTGACGCC 19322 Query 78881 ATTATATAGTCCTTGAATAACTTTCATGGCGATTTTGACAGGATCTACAAACTCAGTGTT 78940 ||| | || ||| |||||| | |||| ||| ||||| || | || ||||| Sbjct 19321 CGGATACACGCCAGCAATCACTTTCTGAGATATTTGGACGGGATCAACGTATTCTGTGTT 19262 Query 78941 CAATCCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAATATAACATTCTCCTT 79000 || || || | |||| | || || | |||||||| || ||| | || || || Sbjct 19261 TAAGTTGTAGCAGAGTTTTGTGATTCGCGCAGTGATTTTGTCGAATTTGACGACTTCTTT 19202 Query 79001 GCATCCATTTCGTTTAATAACGAACATCGTTTGG 79034 | ||| | ||||| || || |||| ||||| Sbjct 19201 TCGTCCGTCACGTTTGATGACATACAT--TTTGG 19170 >seq3629 Length=149247 Score = 246 bits (272), Expect = 4e-60 Identities = 613/910 (67%), Gaps = 23/910 (3%) Strand=Plus/Plus Query 47855 ATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCAT 47914 |||||| || || |||||||| ||||| || ||||| |||| || || || | ||||| Sbjct 30652 ATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAATCATATCCAT 30711 Query 47915 AAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTC-TGAAATCAGTC 47973 | ||||| |||||| || | ||| | || | | || | | | || || || || Sbjct 30712 CCAGTCAAAGGGATTAGAAGCGTGATATAACTTGCTGACGCCAAGTGCATGTAA-CAATC 30770 Query 47974 TATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAA 48033 ||| || || || || || ||| ||||| |||||||||| || || | | Sbjct 30771 GATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCTCGA 30830 Query 48034 CTGGTAGAGCCTC-CGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCG-A 48091 |||| || | || |||| ||| ||||||||||| | || || || || || | | Sbjct 30831 CTGGAAGTGAATCTCGTAC-AAATTCTTGTTCGATGATAACGGCGTCGGAAATGATTGCA 30889 Query 48092 TGT-TACCGTTTCCTCACTTGGTGGATACA-ACAAATGTTTAA-ACATTAAACATGCAAA 48148 || || | ||| || | | || || | | | | |||| | ||||||||| Sbjct 30890 TGAATAGAG---CCTT-CTGGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGCAAA 30945 Query 48149 ATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCAT 48208 |||||||| || |||||||| | ||| || | || || ||||| || || ||||| Sbjct 30946 GTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCAT 31005 Query 48209 TAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTC 48268 | ||| ||||| || ||||||||||| | ||| ||||| || || || || ||||| Sbjct 31006 CAATCCTCGTTTCTTCAGCCAAAATATAGAGCAGAATGATCCGGAGAAAAAGATTCCTTC 31065 Query 48269 TACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATC-CACCGTT 48327 ||||||||||| || | ||| ||| | | ||| | || || ||| |||| || Sbjct 31066 GACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTT-TGGATCGCACCATT 31124 Query 48328 ---GTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAA 48384 ||||| | || || || | || || || |||||||| || || | || || Sbjct 31125 TCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGC-GCATAGTAAA 31183 Query 48385 AG-tttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAG 48443 | | |||||| | |||||| | ||| ||||| || || | ||||| ||| ||| Sbjct 31184 TGCTGTTTTTCGGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAG 31243 Query 48444 TGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACC 48503 || |||||||| ||||| || || ||||| ||||| |||| ||||| | ||| || ||| Sbjct 31244 TGTATATTTTCTATTGCAATTTGGAATCCATAAAAGCATCGAGCTTCCGGGATTTGAACC 31303 Query 48504 TCCGTAC--AAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAA 48561 || | | ||| || | || | ||| ||||| || || |||||||| || ||||| | Sbjct 31304 TCACTGCTGAAATTCAT--GGCGAGATTTTCATTAACAATCCCATCACTGGCTGCAAAGA 31361 Query 48562 ATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGA 48621 | || || || ||||| ||||| | | | || ||| | | ||| ||||||||| | Sbjct 31362 AGGCCAACACGTGTTTGATAAAGTGTCTCTCATTGTCCGATATATTAAGCCAGTCATTCA 31421 Query 48622 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACA 48681 | || | | ||| | |||||| || |||||||| |||||||||||| ||||||| Sbjct 31422 TGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCTTTCTTATACA 31481 Query 48682 TATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTTGCAA 48741 | | ||| || ||| | ||| || || || | ||||| | || ||||||| | | Sbjct 31482 TGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCGGTTCGGATTTTCTCGGA 31541 Query 48742 GGATAGGTTC 48751 | | |||||| Sbjct 31542 GAAAAGGTTC 31551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694636280816800