Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq25 176 9e-39 seq655 165 2e-35 seq1629 149 1e-30 seq821 105 1e-17 seq3359 98.7 2e-15 >seq25 Length=104834 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || |||| || ||||| |||||| ||||||||||| || ||| Sbjct 78423 CCACCACGAAGACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCA 78482 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || || ||||||||||| || || ||||||| |||||| || ||| ||| Sbjct 78483 AGAGTACGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGA 78542 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || |||||||| ||||| || ||||| ||||||| ||||| |||| || ||| Sbjct 78543 ATTCCTTCTTTGTCTTGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACT 78602 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | |||||| ||||| || || | || || || || |||||||| Sbjct 78603 TCCAAAGTGATGGTCTTTCCAGTAAGCGTTTTCACAAAAATCTGCAT 78649 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || |||| || ||||| |||||| ||||||||||| || ||| Sbjct 78195 CCACCACGAAGACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCA 78254 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| || || || || |||||||| |||||||| || | |||||| ||||| ||| Sbjct 78255 AGCGTTCGTCCGTCTTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAGGA 78314 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || ||||| |||||||| || || || | |||||||| || |||| ||| ||| Sbjct 78315 ATTCCTTCTTTGTCCTGGATCTTCGCCTTCACATTGTCGATAGTATCTGAAGATTCCACT 78374 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || | || || || || || |||| |||||||| || || |||||| Sbjct 78375 TCCAACGTAATAGTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCATT 78422 >seq655 Length=45005 Score = 165 bits (182), Expect = 2e-35 Identities = 151/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969 |||||||||||||||| || || ||||| ||||| ||||| | |||||| || || || | Sbjct 27415 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 27474 Query 282970 TCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTAT 283029 ||||||| |||||||| ||||| || ||||||||||| ||||| || || || ||| Sbjct 27475 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 27534 Query 283030 CGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 |||| ||||| || | |||||| || |||||||| || || || || | || || |||| Sbjct 27535 CGATGGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTTTTGACGA 27594 Query 283090 ATATCTGCATT 283100 | ||||||||| Sbjct 27595 AAATCTGCATT 27605 >seq1629 Length=81605 Score = 149 bits (164), Expect = 1e-30 Identities = 418/632 (66%), Gaps = 25/632 (4%) Strand=Plus/Minus Query 316573 TTCACGAATTCGGACAGATTTCCTTTATACTTCTTCAGCTTCAGGTTGGGTTCGTAATGG 316632 || || || || |||| ||| ||||| ||| |||| ||||| | | |||||| || Sbjct 62689 TTGACAAACTCTGACAAATTACCTTTGTACGTCTTGAGCTTGCGT---GCTTCGTAGTGA 62633 Query 316633 ATGATAGAAGTACAGACAGCATCGAGGAAACCAGAATCGTGTGATACAATCACACATGAA 316692 | || ||||| ||| ||| | ||| |||| ||||| |||||||||| || | | Sbjct 62632 ACAATGTTCGTACAAACATGATCCAAGAATCCAGGGTCGTGGGATACAATCATACTGGTA 62573 Query 316693 ACGCCTTTTAGGTTGACCAGATAGTCGATCAGCCAGCTCACATTCGACACAGAAAGATGG 316752 ||| || ||| || ||||| ||||||| |||||| ||| |||||| Sbjct 62572 ACGTTGGGTAAATTGTTCAAATAGTTTTCCAGCCAGGCGACATTCTTTACATCGAGATGG 62513 Query 316753 TTGGTCGGTTCGTCAAGTAGTAGTAGCTTCGCGTCCAACAGCATAGCGCGTGCGAGAGCA 316812 || || ||||| ||||| || || | | || | || || ||| || || ||||| | Sbjct 62512 TTCGTAGGTTCATCAAGAAGCAGAACATCAGCTTGCATCAACATGGCACGAGCGAGTTCT 62453 Query 316813 AGCTTCATTTTCCACCCCCCGGAAAGAGTGTTAATCGGGGCAGATTGGCGCTCAACATCA 316872 |||||||||||||| || || || | || | ||| | ||| ||| || Sbjct 62452 AGCTTCATTTTCCATCCACCCGATAAAGATGAGACCGGTAAATGTTGCATTTCATCAGTG 62393 Query 316873 AAGCCAACTGATTCGAGAGTAGACACGATTTTTTCACGAGAC--CAT---GTGTT--TTC 316925 || || || | || || || || | || ||| || ||| ||| | ||| Sbjct 62392 AACCCGAC-GCTT---GA-TAAAC-------TATCGCGA-ACTTCATCTCGTGGTACTTC 62346 Query 316926 TTTAACTTGGTCGTCATTGGCAATGAAGTCAACGATAGACGTGTTAGATTCGGATCCGTC 316985 ||| | | || ||| ||||| || | || || | | ||| || | | Sbjct 62345 TTTCAACTCTTCATCACAAAACATGAATTCTATGACAGGAAGCATCGCTTCAGAAGCCTG 62286 Query 316986 GAGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTTCGTCGGGAACCCTTCCAACTG 317045 | | ||| || ||| | |||| || || ||| || | ||| || ||||||| || Sbjct 62285 CAAATTATGTTCGACAAACACAGTCTTTAGCTCATCTTTAGACGGAAATCCTTCCAGTTG 62226 Query 317046 ACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCA-CCATTGGGGCCGCAAAGAC 317104 ||||| | || || |||||||| || || || || ||| ||||| || || || |||| Sbjct 62225 GCCGTTAGCGATGGCTCTCATCAGCGTTGATTTACC-GCATCCATTTGGACCACAGAGAC 62167 Query 317105 CATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCAT 317164 |||| |||| ||| |||||| | || |||| ||||||||| |||||| ||||||||| Sbjct 62166 CATAACGATGTCCTCTCTTCAAACGCAACCGGGCGTTGTTCAGTAGAATCATACCACCAT 62107 Query 317165 ATGCCAGAGAGAACTCACAATCACACAGGTCC 317196 | |||| |||||||||||||| ||| || ||| Sbjct 62106 ACGCCAAAGAGAACTCACAATTACATAGATCC 62075 >seq821 Length=42298 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || | || || ||||||||||||||||||||||| || |||||||| || || Sbjct 35999 ACCACCGCGTAATCGTAGAACCAGATGTAACGTGCTTTCTTTCTGAATGTTGTAATCCGC 35940 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || ||||| || | ||||||||| ||||| || | ||| |||||||| || Sbjct 35939 TAATGTTCGACCATCTTCCAATTGTTTCCCAGCAAAAATGAGACGCTGTTGGTCCGGGGG 35880 Query 282992 AATACC 282997 |||||| Sbjct 35879 AATACC 35874 >seq3359 Length=441171 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || || || |||||||| |||||||| || | ||||||||||||| ||| Sbjct 430358 AGAGTACGACCGTCTTCAAGTTGTTTTCCGGCAAAAATTAGACGTTGTTGGTCAGGAGGA 430299 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||||||||| ||| ||||| || || | || || ||||||| | ||| || Sbjct 430298 ATTCCTTCCTTGTCTTGAATC-TTGCTCTTGACATTGTCAATCGTGTCCGCTGATTCTAC 430240 Query 283052 TTCGAGAGTGATCGTCTTACC 283072 |||||| || || || || || Sbjct 430239 TTCGAGTGTAATTGTTTTTCC 430219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046688974509230