Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq25 172 1e-37 seq655 140 8e-28 seq3359 105 2e-17 >seq25 Length=104834 Score = 172 bits (190), Expect = 1e-37 Identities = 162/205 (79%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| |||||||| || || ||||| || ||||| | || || || |||||| Sbjct 78646 CAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCTTCAGAC 78587 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || |||||||| |||||||||||||| ||||| || |||||| Sbjct 78586 ACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAGCAA 78527 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| |||||||| || ||||| ||| | |||||||| ||||| ||| || Sbjct 78526 CGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGTACTCTTGCGGATTACAACATC 78467 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||||||||| |||| |||| Sbjct 78466 CAGAAAGAATCAACGTTGCA-CTTG 78443 Score = 159 bits (176), Expect = 8e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || || || || ||||| || || | || |||||| ||||| Sbjct 78418 CAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTCAGAT 78359 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||| ||||||||||||||||| ||||| ||||||||| Sbjct 78358 ACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGACCAGCAA 78299 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || ||||| ||||| || ||||| ||| | || ||||| ||||| ||| || Sbjct 78298 CGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGAACGCTTGCGGATTACAACATC 78239 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||||||||| |||| |||| Sbjct 78238 CAGAAAGAATCAACGTTGCA-CTTG 78215 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || || || || ||||| || || || || || || || ||| Sbjct 78190 CAAATTTTTGTTAAGACGCTGACCGGGAAAACTATAACTCTGGAAGTCGAGTCATCTGAC 78131 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||||||||||||||| ||||| ||||||||| Sbjct 78130 ACTATTGACAATGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGACCAGCAA 78071 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || ||||| ||||| || ||||| ||| | || ||||| ||||| ||| | Sbjct 78070 CGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGAACGCTTGCGGATTACAACATT 78011 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || || ||||| || Sbjct 78010 CAGAAAGAGTCTACGCTTCATCTGGT 77985 >seq655 Length=45005 Score = 140 bits (154), Expect = 8e-28 Identities = 143/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| ||||| || ||||| ||||| || ||||| ||| || ||| Sbjct 27601 CAGATTTTCGTCAAAACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATCCGAC 27542 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || |||||||| ||||| |||||||| ||||| ||||| || Sbjct 27541 ACCATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCAACAG 27482 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| |||||||| | || || || | || || || ||||| ||| || Sbjct 27481 CGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCTCGCGGATTACAACATC 27422 Query 178104 CAAAAAG 178110 ||||||| Sbjct 27421 CAAAAAG 27415 >seq3359 Length=441171 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 177947 AGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAA 178006 ||||||||| || || ||||| || ||| | ||||| || || || ||||| || Sbjct 430218 AGGAAAAACAATTACACTCGAAGTAGAATCAGCGGACACGATTGACAATGTCAAGAGCAA 430277 Query 178007 GATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACA 178066 |||||| ||||| |||||||| ||||| ||||| ||||| || || || ||||||||||| Sbjct 430278 GATTCAAGACAAGGAAGGAATTCCTCCTGACCAACAACGTCTAATTTTTGCCGGAAAACA 430337 Query 178067 GCTCGAAGATGGAAGGACTCT 178087 || ||||| || | ||||| Sbjct 430338 ACTTGAAGACGGTCGTACTCT 430358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203673441591530