Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1573 257 2e-63 >seq1573 Length=148509 Score = 257 bits (284), Expect = 2e-63 Identities = 595/878 (68%), Gaps = 24/878 (3%) Strand=Plus/Minus Query 15917 TAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATA 15976 || || | ||||||||| || || ||||| |||||||| | | ||| || | ||||| Sbjct 118822 TATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAATCATATCCATC 118763 Query 15977 AAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCC-GTAACTAATCT 16035 | ||||||||||||| ||| | ||| ||| | || ||| | ||||| |||| Sbjct 118762 CAGTCAAAGGGATTAGAAGCGTGATATAACTTGCTGACGCCAAGTGCATGTAAC-AATCG 118704 Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAG-TCGTA 16094 ||| || ||||| || || ||||||| ||| || |||| ||||| || || ||| | Sbjct 118703 ATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCTCG-A 118645 Query 16095 CCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGG 16154 | ||||| | | | || ||||| |||||| || | ||| || || |||||| | Sbjct 118644 CTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAATGATTGCA- 118586 Query 16155 TGGCTCGTGT-TTCAGACGGTGTATGGTTTAGGTGTTTAAA---CATTAGACACGCGAAG 16210 || | | | ||| | | ||| ||| |||| | ||| ||||| || ||| Sbjct 118585 TGAATAGAGCCTTCTGGAAGCTTAT---TTACCAGTTTCGAGTACATCAGACATGCAAAG 118529 Query 16211 TCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATT 16270 || |||||||||||||| || | ||||| || || || ||||| | || ||||| Sbjct 118528 TCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCATC 118469 Query 16271 TTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGAATATACCCTC 16329 |||||||||||| | ||| ||||| | |||| ||||| || || || || || || || Sbjct 118468 AATCCTCGTTTCTTCAGCCAAAATATAG-AGCAGAATGATCCGGAGAAAAAGATTCCTTC 118410 Query 16330 AACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCAT-CTTTATTACGAATCCATT 16388 || | ||||| || | | || ||| || ||| |||| |||| || | ||||| Sbjct 118409 GACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTTTGGATCGCA-CCATT 118351 Query 16389 TCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATT 16448 || |||||| ||||| | | | || || ||||| || || | || | Sbjct 118350 TCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCACAGTAAAT 118291 Query 16449 TCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGT 16508 || |||||| ||| | || || |||||||||| ||| |||| ||| |||| Sbjct 118290 GCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAGT 118231 Query 16509 GTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTT 16568 |||| || ||||| || || |||||||| || ||||||||||| || | || || || | Sbjct 118230 GTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTGAACCT 118171 Query 16569 C-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAAC 16627 | | | |||| | || || || ||||| || || || ||||| || ||||| || Sbjct 118170 CACTGCTGAAATTCAT-GGCGAGATTTTCATTGACAATTCCATCACTGGCTGCAAAGAAG 118112 Query 16628 GCCAATATGTGCTTAATGAAATATTTTTC---GTCAGATGTAAGAATATGCCAATCTTTT 16684 ||||| | ||| || || || | | |||| ||| ||| | | || |||| || || Sbjct 118111 GCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGAT---ATATTAAGCCAGTCATTC 118055 Query 16685 AAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATAC 16744 | || | | ||| | |||||||| ||||||||||| ||| |||| || |||||| Sbjct 118054 ATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCTTTCTTATAC 117995 Query 16745 ATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 || | |||||| ||| | |||||| ||||||| ||| Sbjct 117994 ATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGAC 117957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511367995535880