Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1573 260 2e-64 seq534 219 5e-52 >seq1573 Length=148509 Score = 260 bits (288), Expect = 2e-64 Identities = 439/626 (70%), Gaps = 11/626 (2%) Strand=Plus/Minus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 |||||| |||||| || || || ||||| || || || | ||| || | || || |||| Sbjct 118545 ACATCAGACATGCAAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAA 118486 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 24245 | ||||| ||||| | || || || || ||||||||||| || ||| |||||||| Sbjct 118485 AGCAAAGTCCAGGCATCAATCCTCGTTTCTTCAGCCAAAATATAGA-GCAGAATGATCCG 118427 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG 24305 || || || |||||||| || ||||||||||| | | ||||||| || | ||| Sbjct 118426 GAGAAAAAGATTCCTTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATAC 118367 Query 24306 TCATGTATC-CACT-TTTGA--GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 24361 | || ||| ||| ||| | ||||| | || || || | || || || ||||| || Sbjct 118366 TT-TGGATCGCACCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTC 118308 Query 24362 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 24421 || || | | || | ||||||| | |||||| | |||||||||||||| | Sbjct 118307 AATCGCGCACAGTAAATGCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAA 118248 Query 24422 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 24481 ||||| |||||| || || ||||| || || |||||||||||||| || |||| ||| Sbjct 118247 CGAATACACTTCCGAGTGTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGC 118188 Query 24482 CTCGGTAATCTGTACTTCTATAC--AAAATCGTTCTGCTAAATTTTCATTCACTATTCCG 24539 |||| ||||| || || | | ||| || | || | ||||||||| || ||||| Sbjct 118187 TTCGGGGATCTGAACCTCACTGCTGAAATTCATG--GCGAGATTTTCATTGACAATTCCA 118130 Query 24540 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT 24599 |||||||||||||| || ||||| || ||||| ||||| | | |||| | | || Sbjct 118129 TCACTGGCTGCAAAGAAGGCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATATA 118070 Query 24600 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 24659 ||| ||| ||||| || || | | ||| | |||||| | |||||||| |||| Sbjct 118069 TTAAGCCAGTCATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCC 118010 Query 24660 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTA 24719 ||||| || |||||||| | ||| || ||| | ||| || ||||| | ||||| | Sbjct 118009 TCTGCTTTCTTATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCGG 117950 Query 24720 TTTGGATTTTTTGCAAGGATTGGTTC 24745 || ||||||| | ||| | ||||| Sbjct 117949 TTCGGATTTTCTCGAAGAAAAGGTTC 117924 >seq534 Length=9540 Score = 219 bits (242), Expect = 5e-52 Identities = 1024/1619 (63%), Gaps = 14/1619 (1%) Strand=Plus/Plus Query 53445 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 53504 || |||| || ||||| || || | || || || || | || | ||| ||||||| Sbjct 4584 CGAAATACATCGTTTCAAAAATTTCTTTGTTGAGCTCGCGAGCAGCTTTGCTTTCAAATG 4643 Query 53505 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 53564 || | | | || | ||||| || || | |||||||| || || || || |||| || Sbjct 4644 GAAGACTCATCAGTAAAAACGTATCGGCAAGACCTTGAACGCCGATTCCAATCGGTCGAT 4703 Query 53565 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 53624 ||| || ||| | || ||||| ||||| ||||||||||| | ||| || ||||| | Sbjct 4704 GTCGCTGATTGCTCACTTGTGCTTCAGGAATCGGATAATAATTGAGATCAATGATTTTGT 4763 Query 53625 TGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCAT 53684 |||| ||| | || | ||| | || | | ||| ||| | ||||| | | Sbjct 4764 TGAGATTTTTCGTAACGATTTTTGTGATTTCGTATAATTTTGCAAATTGAAATTCTT--T 4821 Query 53685 CTATTACAAACATGTT--CAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGC 53742 || |||| | || || |||||| || || |||| ||| || || || || || || | Sbjct 4822 CTGATACACAAATTTTGACAATGCGATGGAAGCCAAATTGCATACTGCCACTTCTTTGGA 4881 Query 53743 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 53802 || | || | || || ||| ||| ||||| || | |||||||| | ||| || Sbjct 4882 GTCTGAGTACTCGATGATTTCACAGCAGAGATTGCTTGATCGAATGGTTCCAAGATTCTG 4941 Query 53803 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAAT 53862 ||||| || ||||| || || || ||||| || | ||||| || || ||||| Sbjct 4942 CTGATTGGATTTACGATTACAAGCGTCTTTGTAAAGCATATACGGCGTTCCGGTCTCAAT 5001 Query 53863 CTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT 53922 ||| || | ||| || ||| | | || || | | | | | || Sbjct 5002 CTGACTATCCAAAATGGCAAACCACAATTGCTGGGCTTTGACAGTCTTTCGGGCAATGTT 5061 Query 53923 TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCC 53982 || ||||| | |||| || ||||| ||| |||||| | | | || Sbjct 5062 TTGAGACTCGTACTTTTTATATAACGCATCAAATTCGCTTCCCCATGTCTCATAAAGTCG 5121 Query 53983 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 54042 ||| || | |||||| | || ||| ||| || || | ||| ||||||||||| Sbjct 5122 TGGAGCCTCGTTCGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACACGTTTCATAAA 5181 Query 54043 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 54102 ||||| || ||||||||||| ||| | ||||| | || ||| || ||||| Sbjct 5182 CAGATCGGGGATCCAAAGAGCATAAAACAAATCTCGAGCTCGATGGAGTTCATTTCCATG 5241 Query 54103 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGT 54162 |||||| || || || ||| | | ||||| | ||||| || || | || || | Sbjct 5242 ATTCTTACGTAGTTCCAGAAACTCAAAGATATCCGCGTGCCAGGGCTCTAGATAAATTGC 5301 Query 54163 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 54222 | | || ||| || || || ||||| | ||||| ||| |||| ||| | || Sbjct 5302 AAAAGACCCTTTCCGCTTCCCACCGCCTTGATCAACGTATCGAGCTGTGTCATTGAACAC 5361 Query 54223 TCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACT 54282 | | |||||||| ||| ||||| || ||||| |||||| ||||| || | Sbjct 5362 CCGAAGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAACTGTTGGT 5421 Query 54283 GGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCA 54342 || |||||||| ||| | || || || || ||| || || || | || || Sbjct 5422 GGAGCGAATATTGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATACACGCACA 5481 Query 54343 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 54402 | |||| | ||| || || ||||| || ||| |||||| |||| | ||||||||| Sbjct 5482 TTGTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATAGAAAACA 5541 Query 54403 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 54462 || | |||| | ||| ||||||||||| || | || |||| || |||||||| Sbjct 5542 CGACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCATGCGTAAA 5601 Query 54463 CCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAAT 54522 | |||| || | | | ||||| || | | | | ||| | || | || || || Sbjct 5602 GAACTTTTGTGACATGTGTTCATACGTTTCCAAAACGGCGTCCAAATTCTCTTTGTGTAT 5661 Query 54523 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 54582 || || || || ||||||| ||| || || || | |||| | || || | Sbjct 5662 GCCGACAGCCACTCGCATTATCATATGTTGTGGGCGTTCACACACTTTTCCATTCACACG 5721 Query 54583 CAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 54642 || || || ||||| |||| ||||||||| |||||||||| ||| |||||||| || Sbjct 5722 CAACAGATACGATTTCTCCAGAGTTTTAAAGCCAAAATAGTCGTAATCAAAGTCTCTATC 5781 Query 54643 GTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT 54702 ||||| | || ||||| || || | | |||| | || ||| || | Sbjct 5782 ACCGATAATTGCGGAATTGAGAGCTTCTTTGTTCTCCATAAC-AATTCGATGCACATCGT 5840 Query 54703 TG--AAATAATCGGAGAATG---TTTCCCATTTTTAGGATTGACATAGTTAAATAAATCC 54757 || | |||| |||| | ||| ||| | || | || |||||| Sbjct 5841 TGGCGATTAAT-GGAGCGGGTACTTTGGTGGTTTCGTGCTTATTTTCGTAAAATAA---T 5896 Query 54758 TTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTA 54817 | || |||||| || | ||| ||||| | ||| |||| ||| || | || |||| | Sbjct 5897 TGAATGTTTTCACTGAAGACTTTGTTTGTATTTTTATGTAAATTGGAAATAGCAATTCGA 5956 Query 54818 GCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTC 54877 || || | ||| |||| ||||||||||| | || ||||| |||| |||| | Sbjct 5957 GCAGCCAATTTGGAGAAATCGGGATGTTGTGTGCTGCAGTAAGCTGCGGTTTCTGCTGCC 6016 Query 54878 AGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCT 54937 | ||||||||| || || || || ||| | || || || ||| || | Sbjct 6017 AATTCGTCCAATTCCGATGTGGTGACGCCCGGATACACGCCAGCAATCACTTTCTGAGAT 6076 Query 54938 ATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGAT 54997 |||| | ||||| | | || ||||||||| || || | |||| | || || | Sbjct 6077 ATTTGGACGGGATCAACGTATTCTGTGTTTAAGTTGTAGCAGAGTTTTGTGATTCGCGCA 6136 Query 54998 GTGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGACAAACATTTT 55056 |||||||| || || |||| ||| || ||| | ||||| |||||| ||||||| Sbjct 6137 GTGATTTTGTCGAATTTGACGACTTCTTTTCGTCCGTCACGTTTGATGACATACATTTT 6195 Score = 89.7 bits (98), Expect = 6e-13 Identities = 133/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 52838 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTT 52897 || || |||||||||||||| || || ||||| ||||| |||| |||||||| Sbjct 3971 GTTCGGAGATAGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGAA 4030 Query 52898 GTTAGTTTGGAATAAC--TCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGA 52955 || ||||| | | || |||| || || || || ||||| | |||||||| ||| | Sbjct 4031 GTGAGTTT--ACTGACAGTCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAAA 4088 Query 52956 TGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAG 53015 || | ||||| | || |||||||| | | |||| |||||| |||||||||| | Sbjct 4089 TGTACGCTCCTCGATCGGCAGCCATGTCCAAAATCGCCTTTTGCTTGATTTCCCAAACTG 4148 Query 53016 TTTTATA 53022 |||| || Sbjct 4149 TTTTGTA 4155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593667727186320