Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1573 143 3e-29 seq2330 91.5 2e-13 >seq1573 Length=148509 Score = 143 bits (158), Expect = 3e-29 Identities = 320/473 (68%), Gaps = 8/473 (2%) Strand=Plus/Plus Query 116729 GACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATC 116788 ||||| || | || || ||||| |||||| ||||||| || || ||||| || || || Sbjct 118077 GACAATGAAAGACACTTTATCAAACACGTGTTGGCCTTCTTTGCAGCCAGTGATGGAATT 118136 Query 116789 GTCAACGAGAATCTGGTCGAGCGTTTCGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTG 116847 ||||| || ||||| | | | |||| ||| ||||| ||| | |||| || || || Sbjct 118137 GTCAATGAAAATCTCGCCATGAATTTCAG-CAGTGAGGTTCAGATCCCCGAAGCTCGATG 118195 Query 116848 CTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCAT 116907 ||| ||||| ||||| || || || || || | ||||||||| |||||||| | || Sbjct 118196 CTTTTACGGATTTCAAATTGCAATAGAAAATATACACTCGGAAGTGTATTCGTTATTGAT 118255 Query 116908 CGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGAT 116967 || || ||| | | | || || | | ||| || ||| || || || || Sbjct 118256 TGATACATACATCAAAGATCCAACTGAAAAACAGCATTTACTGTGCGCGATTGAAACAAT 118315 Query 116968 GCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAG-AGGCCG 117026 |||||||| | | || || | |||||| || ||| || || || | ||| Sbjct 118316 CCCGTGCGTTACCAATAAAGCACAATGGGCGTTGAAATGGTGCGATC-CAAAGTATGCCT 118374 Query 117027 CCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTT 117086 | || | || | |||| ||||| ||||||||||| || |||| || || || | Sbjct 118375 CGTTTGCAGAAAGAGTGGTAGCCTTTGCGGCCGTCGAAGGAATCTTTTTCTCCGGATCAT 118434 Query 117087 TCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCC--TGACTTTCAGCAA 117144 || | | ||||||||||| |||||||| || | ||||| || | || ||||| || Sbjct 118435 TCTGCTCTATATTTTGGCTGAAGAAACGAGGATTGATGCCTGGACTTTGCTTTTCA--AA 118492 Query 117145 CGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGT 117197 ||||||||| | || || || || ||||| |||||||| ||| || ||| Sbjct 118493 TGAGCTCATCAGTCGTGATGAAGGACTACATTGTGACTTTGCATGTCTGATGT 118545 >seq2330 Length=206 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || |||||||| || || || |||||||| | || || || | || Sbjct 206 ATGCAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCTTCC 147 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || |||| |||||||| || || || | || ||| Sbjct 146 GACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAG 87 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| ||| || ||||| || || |||| || || || || |||||| Sbjct 86 CAACGTCTGATCTTCGCTGGTAAACAACTAGAAGACGGACGTACTCTTGCGGATTACAAC 27 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||| || | ||| |||| Sbjct 26 ATCCAGAAAGAATCAACGTTGCA 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515172450297840