Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq474 132 7e-26 seq623 109 8e-19 seq2230 102 1e-16 seq2330 93.3 6e-14 >seq474 Length=30871 Score = 132 bits (146), Expect = 7e-26 Identities = 275/406 (68%), Gaps = 5/406 (1%) Strand=Plus/Plus Query 205384 TGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTA 205443 ||||| | || ||||| |||| || || ||||| ||| || |||| | || | Sbjct 10803 TGATTCATGTAGATATGGGCATCTCCGATCACATGAACAAACTCGCCGGGTTGGAGATCA 10862 Query 205444 GTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCT 205503 || | ||||||||||| | ||||| | || ||||||| ||||||||| || || Sbjct 10863 GTCACGTGTGCAATCATTTTTGTCAAAAGCGCGTAGCTAGCAATATTAAATGGAACGCCC 10922 Query 205504 AAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTACA 205563 | ||| |||||||| |||| || |||||||| |||| | ||| ||| || Sbjct 10923 AGACCAATATCAGCGGATCGCTGGTACATTTGGCATGATA---ATTCCCCATTTGCAACG 10979 Query 205564 TGAAATTGTACAAAACA-ATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATT 205622 | |||||| || | || |||||| || |||| |||| | | | ||| | ||||| Sbjct 10980 TAAAATTG-GCACATCAGATGACAGGGAGGTAATGCCATTTCGGCTAAATCGGTTGGATT 11038 Query 205623 CCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATATG 205682 ||| || | ||| || ||| || | | | | | | |||| | ||| | ||| | || Sbjct 11039 CCAAGCGGATAAGATGATACGTCGACAATTTTGGTCAGTTTTGAGTTTGTGTATCACATC 11098 Query 205683 TGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACC 205742 | | ||||||||| || || | |||| | || |||||| | || | ||||| Sbjct 11099 GGCGAGTTGATCAAAGCCCTGGCCACTGTAATCCGCATGCATATCTGTGTAACTTGCACC 11158 Query 205743 AAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCT 205788 ||||||||||||||||| || || | ||| |||||||| |||||| Sbjct 11159 GAAATGACGCCATTGAAAGCCGTAGATTGGTCCTAAATCGCCTTCT 11204 >seq623 Length=41192 Score = 109 bits (120), Expect = 8e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 124640 AGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCG 124699 |||||| || || || ||||| | || |||||||| || |||||||| || ||| |||| Sbjct 12911 AGGTATTCCCCCGGACCAACAGCGTCTCATTTTTGCTGGGAAACAATTGGAAGATGGTCG 12970 Query 124700 AACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACG 124759 |||||||| ||||| || ||||| |||||| || || ||| ||||| |||| ||||| Sbjct 12971 AACATTAGCGGATTACAACATTCAGAAAGAAAGCACGTTACATCTGGTTCTACGATTACG 13030 Query 124760 AGGTGGTATTAAAAA 124774 |||||| ||| || Sbjct 13031 CGGTGGTGGTAAGAA 13045 >seq2230 Length=15872 Score = 102 bits (112), Expect = 1e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | |||||||| || || ||||| || ||| | ||| | ||| || Sbjct 30 AATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATC 89 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || |||| | || ||| |||||||| || ||||| || || || || || Sbjct 90 CGACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCA 149 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | ||||| |||||||||||||| ||||| | ||||| | | ||||| || Sbjct 150 ACAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCTCGCGGATTACAA 209 Query 124718 TATTCAAAAAG 124728 || ||||||| Sbjct 210 CATCCAAAAAG 220 >seq2330 Length=206 Score = 93.3 bits (102), Expect = 6e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || || || || ||| | || |||| | Sbjct 206 ATGCAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCTTCC 147 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || |||| |||| || |||||||| |||||||| || || |||||||| Sbjct 146 GACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAG 87 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || || || || || |||||| |||| || | || || | | ||||| || Sbjct 86 CAACGTCTGATCTTCGCTGGTAAACAACTAGAAGACGGACGTACTCTTGCGGATTACAAC 27 Query 124719 ATTCAAAAAGAATCAACTTTGCATTT 124744 || || ||||||||||| ||||| || Sbjct 26 ATCCAGAAAGAATCAACGTTGCACTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755387451811200