Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3420 104 2e-17 seq2330 96.9 3e-15 seq2230 95.1 1e-14 >seq3420 Length=11708 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| || | ||||| ||||| |||||||||||||| | ||||| || || Sbjct 278 CACCAGATGAAGCGTAGATTCTTTCTGAATGTTGTAATCCGCAAGCGTGCGACCGTCTTC 219 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || ||||| |||||| |||| ||||| |||||||| ||||| || || ||||||||| Sbjct 218 CAGTTGTTTACCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCTTG 159 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| ||||| | ||| || || | || | ||||| Sbjct 158 AATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAACGTAATAGTTTT 99 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || |||||||| ||||| Sbjct 98 CCCAGTTAGCGTCTTAACAAAAATTTGCAT 69 >seq2330 Length=206 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 118533 AAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGC 118592 ||||| | || || ||||| || ||||||||||| | ||| || || || || Sbjct 1 AAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGAGTACGTCCGTCTTCTAGT 60 Query 118593 TGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATT 118652 ||||| |||||| |||| ||||| |||||||| ||||| || || || |||||| ||| Sbjct 61 TGTTTACCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGAATC 120 Query 118653 TTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCG 118712 || || || | |||| ||||| | ||| || || | || | || || || Sbjct 121 TTGGCCTTTACATTATCGATCGTGTCGGAAGACTCAACTTCCAAAGTGATGGTCTTTCCA 180 Query 118713 GTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||||| |||||||||||||| Sbjct 181 GTAAGCGTTTTCACAAAAATCTGCAT 206 >seq2230 Length=15872 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 ||||||| ||||||||||| | || || ||||| | |||||||| ||| | | Sbjct 220 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 161 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 | | |||||| || |||||||| || || ||||||||| ||| || || || | | Sbjct 160 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 101 Query 118669 CGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 118727 ||| ||||| | || | |||||||| | || | ||||| ||||| || || || || Sbjct 100 CGATCGTGTCGGATGAT-TCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACG 42 Query 118728 AAAATCTGCAT 118738 ||||||||||| Sbjct 41 AAAATCTGCAT 31 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433792019431228