Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq3420 89.7 6e-13 seq2842 82.4 9e-11 >seq3420 Length=11708 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || || ||||| |||||||| || || || || |||| || || || ||||||||||| Sbjct 259 TCTTTCTGAATGTTGTAATCCGCAAGCGTGCGACCGTCTTCCAGTTGTTTACCAGCGAAG 200 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || || || ||||| || | || | | ||||||| | ||| | || | || | | Sbjct 199 ATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGT-CTTGAATCTTGGCCTTTACATT 141 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || || || || | ||| || ||||| || ||||||||||| || Sbjct 140 ATCGATCGTGTCTGAAGACTCAACTTCCAACGTAATAGTTTTCCCAGTTAGCGTCTTAAC 81 Query 43172 AAAGATTTGCATT 43184 ||| ||||||||| Sbjct 80 AAAAATTTGCATT 68 >seq2842 Length=68366 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| |||| |||||||||||||| | ||||| |||||| Sbjct 62314 CTCCCCGACCGGGAATTGAACCCGGGTCCCCCGCGTGACAGGCAGGTATACTAGCCACTA 62255 Query 60126 TACTACCGAGGATTGAATAT 60145 ||||| |||||||| |||| Sbjct 62254 TACTATCGAGGATTTGATAT 62235 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| |||| |||||||||||||| | ||||| |||||| Sbjct 64520 CTCCCCGACCGGGAATTGAACCCGGGTCCCCCGCGTGACAGGCAGGTATACTAGCCACTA 64579 Query 60126 TACTACCGAGGATTG 60140 ||||| ||||||||| Sbjct 64580 TACTATCGAGGATTG 64594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571765714700520