Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq534 210 2e-49 seq1573 172 5e-38 seq3420 113 4e-20 seq2230 93.3 4e-14 >seq534 Length=9540 Score = 210 bits (232), Expect = 2e-49 Identities = 1159/1835 (63%), Gaps = 45/1835 (2%) Strand=Plus/Plus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 || || ||||| ||||| || ||||| ||||| | ||||| ||||| ||||| ||||| Sbjct 3971 GTTCGGAGATAGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGAA 4030 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | ||| | | |||| | | |||| | ||| | || ||||||||| || Sbjct 4031 GTGAGTTTACTGACAGTCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAAATG 4090 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCAT----CGACATTTCCCATAC 22320 |||||||||||||||| ||||| | | ||| ||| | | |||||||| || Sbjct 4091 TACGCTCCTCGATCGGCAGCCATGTCCA-AAAT---CGCCTTTTGCTTGATTTCCCAAAC 4146 Query 22321 GGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTT 22380 || |||||| || | | | ||| || |||| | || ||||| ||| Sbjct 4147 TGTTTTGTACTTTTCTTTCACATGAGGCGGAATTTCAGCGATATTTTGTACGGAACCGCG 4206 Query 22381 ATTGTGTATGATCAAATTTTTAATCGTATCGT-TCCACAAACCGATGGCGGTCAAATCTT 22439 || | | | ||| ||| || ||| | | |||||||| || | | | |||| Sbjct 4207 ATCGCGAAGGATTTGATTCCGAA-CGTCTGATGTCCACAAATTCATCTCAATAAGCTCTT 4265 Query 22440 TGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGT 22499 | |||| ||| || | | ||| || || | | |||||| || | | | |||| Sbjct 4266 CCATGAGATATTTGTTGACAATTGTAAATTCTCCAGCGAGGACGCGTCGATTGAACATGT 4325 Query 22500 TGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCG 22559 |||| |||||||| |||| ||| || || || || || ||||| || || ||||| | Sbjct 4326 TGGAAGTGAACGGCTCGATAGACTCGCAATTGCCGAGAATTTGAGCCGTTGAGGCGGTTG 4385 Query 22560 GCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTC-TTGAGC 22618 ||||||| || | ||| | ||||||| | ||||| | | | || ||| || | | Sbjct 4386 GCATCGGAGCGAGCAGCAAAGAGTTTCGGATTCCGTGAGTAGCTA-CTTGCTCTTTCAAC 4444 Query 22619 ATCGACCAGTCCCACAGATCGGA---CGGCGTCACATTGTCCCACATATCGTATTGCAAC 22675 | ||| ||||| || |||| || | || | ||||||||| |||| || Sbjct 4445 TGCTTCCAATCCCATCGACCGGAATCGGGAATGAC---CTGCCACATATCAAATTGAAAG 4501 Query 22676 ACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCG-GCAAG 22734 | || ||||| | || || | || | |||||||| || | || || || | Sbjct 4502 ATACCTCGACTAACTGGTGATCCAGCATAGCTCTCGTACGGTCC-GAGTTCCCGTGCCAA 4560 Query 22735 TTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTC 22794 ||| | || |||| ||| || |||| || || || || |||| ||||| | || Sbjct 4561 TTCCATGGAAGCTTCCATCGCCGCGAAATACATCGTTTCAAAAATTTCTTTGTTGAGCTC 4620 Query 22795 GGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTG 22854 | || || |||||| | || | || ||||| | |||| || || | ||| || Sbjct 4621 GCGAGCAGCTTTGCTTTCAAATGGAAGACTCATCAGTAAAAACGTATCGGCAAGACCTTG 4680 Query 22855 AACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATA 22914 |||||| || || |||||||| | | | |||| ||||| ||| || || | ||||| Sbjct 4681 AACGCCGATTCCAATCGGTCGATGTCGCTGATTGCTCACTTGTGCTTCAGGAATCGGATA 4740 Query 22915 CCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNN 22974 |||| ||| || || |||| | ||| | || || ||||| || || Sbjct 4741 ATAATTGAGATCAATGATTTTGTTGAGATTTTTCGTAACGATTTTTGTGATTTCGTATAA 4800 Query 22975 NNNNTCAAAGTCGTAAACGCCCGATTGTACAACAAACTTGTTGAC--GGCGATCGAGGCA 23032 |||| | ||| | | ||| ||||| | ||||| ||||| || || Sbjct 4801 TTTTGCAAATT--GAAATTCTTTCTGATAC-ACAAA--TTTTGACAATGCGATGGAAGCC 4855 Query 23033 AGATTGCATACGGCCACCTCGTCTTTGGA---CGTGTACTCTACAATTTCGGTACATAGA 23089 | ||||||||| |||| | |||||||| | |||||| | ||||| || ||| Sbjct 4856 AAATTGCATACTGCCA---CTTCTTTGGAGTCTGAGTACTCGATGATTTCACAGCAGAGA 4912 Query 23090 TTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTG 23149 ||||| | || || || | ||| ||| ||| ||| ||||| || | || ||| Sbjct 4913 TTGCTTGATCGAATGGTTCCAAGATTCTGCTGATTGGATTTACGATTACAAGCGTCTTTG 4972 Query 23150 TAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTC 23209 || ||||| |||||||| || ||||| | ||| || | || || ||||| | Sbjct 4973 TAAAGCATATACGGCGTTCCGGTCTCAATCTGACTATCCAAAATGGCAAACCACAATTGC 5032 Query 23210 TGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTC 23268 || || | ||| ||| || | || || ||||||||||| || ||||| || Sbjct 5033 TGGGCTTTGACA-GTCTTTCGGGCAATGTTTTGAGACTCGTACTTTTTATATAACGCATC 5091 Query 23269 AAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCA 23328 ||||||| || | || || | || | | ||||||| | | |||||| Sbjct 5092 AAATTCGCTTCCCCATGTCTCATAAAGTCGTGGAGCCTCGTTCGGACAGAATAAACTCCA 5151 Query 23329 CATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAG 23388 | || | ||| || ||| ||||||| ||||| || ||||| ||||| || |||| Sbjct 5152 TTCTTGGTTGTCTTCCACACGTTTCATAAACAGATCGGGGATCCAAAGAGCATAAAACAA 5211 Query 23389 TTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACAC 23448 || || || || || || || ||||| | |||| ||| || || | Sbjct 5212 ATCTCGAGCTCGATGGAGTTCATTTCCATGATTCTTACGTAGTTCCAGAAACTCAAAGAT 5271 Query 23449 GTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTG 23508 ||||| ||||| ||||| || |||| ||||| | || | ||| ||||| || Sbjct 5272 ATCCGCGTGCCAGGGCTCTAGATAAATTGCAAAAGACCCTTTCCGCTTCCCACCGCCTTG 5331 Query 23509 ATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGC 23568 ||| ||||| || || |||| ||| |||| | ||||| || || | || || || Sbjct 5332 ATCAACGTATCGAGCTGTGTCATTGAACACCCGAAGCATTGGAACAATTCCATTCGAACT 5391 Query 23569 GCCGCCTACG-CCCGCCACACTCGAACCTTTTGCT----CGAACGTTGTGAACGTGGAAA 23623 | | | || ||||| | | | || ||| | |||| ||| || || Sbjct 5392 TC--CATTCGTCCCGCGAATAT---AACTGTTGGTGGAGCGAATATTGGAAATACTGACG 5446 Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCC 23683 || || || || || | || || || ||| ||||||||||| |||||||| ||||| Sbjct 5447 CCAATACCGCCAGCCCACTTTGAAATACACGCACATTGTTTCAGCGTGTCGTAAATGCCG 5506 Query 23684 TCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTA 23743 ||||| || |||| | | | | |||||||| || | ||| | | ||||| Sbjct 5507 TCGATAGAATCATCTTGCATGGATAATAGAAAACACGACGATAATTGGGGTCGAGGCGTT 5566 Query 23744 GCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTAC 23803 | || ||| || ||||| | || ||||||||| | | ||||| | | ||| Sbjct 5567 CCCGCATTGAAAAGCGTCGGAGTTGCATGCGTAAAGAACTTTTGTGACATGTGTTCATAC 5626 Query 23804 GTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATG 23863 || || | |||| || | | |||| |||||| |||| || || ||||| ||||| Sbjct 5627 GTTTCCAAAACGGCGTCCAAATTCTCTTTGTGTATGCCGACAGCCACTCGCATTATCATA 5686 Query 23864 TATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTT 23923 | ||| || | || | || || | |||||||| || | || ||| Sbjct 5687 TGTTGTGGGCGTTCACACACTTTTCCATTCACACGCAACAGATACGATTTCTCCAGAGTT 5746 Query 23924 TTAAATCCAAAATAGTCATAGTTAAAGTCACGATC 23958 ||||| ||||||||||| || | |||||| | ||| Sbjct 5747 TTAAAGCCAAAATAGTCGTAATCAAAGTCTCTATC 5781 >seq1573 Length=148509 Score = 172 bits (190), Expect = 5e-38 Identities = 588/895 (66%), Gaps = 50/895 (6%) Strand=Plus/Plus Query 57540 TTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCA 57599 |||||| | |||||||| || | | || |||||| ||||||| || || ||||| ||| Sbjct 117954 TTTGTCTTATTTCCGATACAACAATCTGAGATTTGGGACATGTATAAGAAAGCAGAGGCA 118013 Query 57600 TCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGAT--TCCC 57657 |||||||||| |||||| | || || | || ||| || ||| | | Sbjct 118014 AGCTTTTGGACCGCAGAAGAAATCGATTTGGTGCATGACATGAATGACTGGCTTAATATA 118073 Query 57658 TCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATG 57717 || | ||| || ||| | ||||| |||||||||||||| || || || || |||| Sbjct 118074 TCGGACAAT--GAAAGACACTTTATCAAACACGTGTTGGCCTTCTTTGCAGCCAGTGATG 118131 Query 57718 GTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAG--AAGTGCAAGTGACGGAGGC 57775 | ||||| || || ||| | | | | || ||||| || | || || | | || || Sbjct 118132 GAATTGTCAATGAAAATCTCGCC--ATGAATTTCAGCAGTGAGGTTCAGATCCCCGAAGC 118189 Query 57776 GAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCT 57835 |||||||||||||||||||| | || || ||||| | || || ||| |||||||| | Sbjct 118190 TCGATGCTTTTACGGATTTCAAATTGCAATAGAAAATATACACTCGGAAGTGTATTCGTT 118249 Query 57836 ACTCATCGATACGTACGTGAAGGA--CAAC-GACGAGAAACGTAGACTGTTCAACGCGAT 57892 | | || ||||| ||| | || || |||| || | | | | ||||| |||||| Sbjct 118250 ATTGATTGATACATACATCAAAGATCCAACTGAAAAACAGCATTTACTGT---GCGCGAT 118306 Query 57893 CGAAACAATGCCCGCG-ATCGCCAAGAAGGCAGAGTGGTCAATCAAATG----GATAAAA 57947 |||||||| |||| | | |||| || ||| | ||| | | ||||| ||| || Sbjct 118307 TGAAACAAT-CCCGTGCGTTACCAATAAAGCACAATGGGCGTTGAAATGGTGCGATCCAA 118365 Query 57948 AGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTC 58007 || ||| |||| || || || | | || || || ||||||||||| || || Sbjct 118366 AG----TATGCCTCGTTTGCAGAAAGAGTGGTAGCCTTTGCGGCCGTCGAAGGAATCTTT 118421 Query 58008 TTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCT 58066 || || || || ||| | ||||||||| |||||||||| || ||||||| || || Sbjct 118422 TTCTCCGGATCATTCTGC-TCTATATTTTGGCTGAAGAAACGAGGATTGATGCCTGGACT 118480 Query 58067 GACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCT 58126 ||| || ||| | || || || || || || ||| ||| ||||| || || Sbjct 118481 TTGCTTTTCAAATGAGCTCATCAGTCGTGATGAAGGACTACATTGTGACTTTGCATGTCT 118540 Query 58127 AATGTACTCTCACATTGTCAATAAACCGAC-GCGGGATCGCATCTTGGACATTATCACCG 58185 |||||||| | | || ||||| | | | || || || || | || || ||| Sbjct 118541 GATGTACTCGAAACTGGTAAATAAGCTTCCAGAAGGCTCTATTCATGCA-ATCATTTCCG 118599 Query 58186 AGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTA 58245 | || || |||||| | || ||||| || | || || || | | | || | Sbjct 118600 ACGCCGTTATCATCGAACAAGAATTTGTACGAGATTCACTTCCAGTCGAGCTAATTGGAA 118659 Query 58246 TGAA--CAATGATTTGAT--GTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTC 58301 |||| ||| |||||| ||||| ||||| |||||||| || || || | || | Sbjct 118660 TGAATTCAA--GTTTGATGGGTCAA--TACATCGAGTTTGTGGCGGATCGATTGTTACAT 118715 Query 58302 GAACTGATTGGAGAGCGTCA-----TTACAACACG--AAAAATCCGTTTGATTTTATGAA 58354 | || ||| |||||| ||| | |||| ||||| ||||| | ||| | Sbjct 118716 GCAC---TTG----GCGTCAGCAAGTTATATCACGCTTCTAATCCCTTTGACTGGATGGA 118768 Query 58355 TCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATAT 58409 | |||| || || | || || ||||||||||| || ||| ||| | |||||| Sbjct 118769 TATGATTTCTCTGCAAGGAAAAACAAACTTTTTTGAGAAACGCGTTGGAGAATAT 118823 >seq3420 Length=11708 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| || || || ||||| || || | || ||||| | || Sbjct 69 ATGCAAATTTTTGTTAAGACGCTAACTGGGAAAACTATTACGTTGGAAGTTGAGTCTTCA 128 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||||||||||| | || || || ||| Sbjct 129 GACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAGGAAGGAATTCCTCCTGATCAG 188 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || |||||||| ||||| |||||||| | || | ||||| ||| Sbjct 189 CAACGTCTGATCTTCGCTGGTAAACAACTGGAAGACGGTCGCACGCTTGCGGATTACAAC 248 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTAG 31422 ||||| |||||||| || ||||||||||| ||| | || | || ||||| Sbjct 249 ATTCAGAAAGAATCTACGCTTCATCTGGTGCTTCGTCTTCGTGGTGGTAG 298 >seq2230 Length=15872 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || || ||||| ||||| | || || ||| | ||| Sbjct 31 ATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATCC 90 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||||||||||| | || |||||||| Sbjct 91 GACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCAA 150 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||| | || ||||| || ||||| ||||| ||| Sbjct 151 CAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGAC 186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445725952271280