Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1573 242 5e-59 seq534 232 8e-56 >seq1573 Length=148509 Score = 242 bits (268), Expect = 5e-59 Identities = 433/625 (69%), Gaps = 9/625 (1%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 |||||| |||||| || || || || || || || || | ||| || | || || |||| Sbjct 118545 ACATCAGACATGCAAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAA 118486 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | ||||| ||||| | || || || || ||||||||||| || ||||||||||| Sbjct 118485 AGCAAAGTCCAGGCATCAATCCTCGTTTCTTCAGCCAAAATATAGAGCAGAATGATCCGG 118426 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT 33753 | || ||||||||||| || || |||||||| | | ||| ||| || | ||| | Sbjct 118425 AGAAAAAGATTCCTTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACT 118366 Query 33754 CATGTATC-CACT-TTTGA--GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 || ||| ||| ||| | ||||| | || || || | || || || || ||||| Sbjct 118365 T-TGGATCGCACCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCA 118307 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869 || || | | || | ||||||| | |||||| | || ||||| ||||| | Sbjct 118306 ATCGCGCACAGTAAATGCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAAC 118247 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 ||||| |||||| || || ||||| || || || ||||||||||| || |||| ||| Sbjct 118246 GAATACACTTCCGAGTGTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGCT 118187 Query 33930 TCGGTAATCTGCACTTCTGTAC--AAAATCGTTCTGCTAAATTTTCATTCACTATTCCAT 33987 |||| ||||| || || | | ||| || | || | ||||||||| || ||||||| Sbjct 118186 TCGGGGATCTGAACCTCACTGCTGAAATTCATG--GCGAGATTTTCATTGACAATTCCAT 118129 Query 33988 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT 34047 ||||||||||||| || ||||| || ||||| ||||| | | |||| | | || | Sbjct 118128 CACTGGCTGCAAAGAAGGCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATATAT 118069 Query 34048 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 34107 || ||| ||||| || || | | ||| | |||||| | |||||||| ||||| Sbjct 118068 TAAGCCAGTCATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCT 118009 Query 34108 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTAT 34167 |||| || |||||||| | ||| || ||| | ||| || || || | ||||| | | Sbjct 118008 CTGCTTTCTTATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCGGT 117949 Query 34168 TTGGATTTGGTGCAAGGATAGGTTC 34192 | |||||| | ||| | |||||| Sbjct 117948 TCGGATTTTCTCGAAGAAAAGGTTC 117924 >seq534 Length=9540 Score = 232 bits (256), Expect = 8e-56 Identities = 1034/1624 (64%), Gaps = 24/1624 (1%) Strand=Plus/Plus Query 62683 CGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATG 62742 || |||| || |||||||| || | || || || || | || | ||| ||||||| Sbjct 4584 CGAAATACATCGTTTCAAAAATTTCTTTGTTGAGCTCGCGAGCAGCTTTGCTTTCAAATG 4643 Query 62743 GATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62802 || | | | || | ||||| || || | |||||||| || || || || |||| || Sbjct 4644 GAAGACTCATCAGTAAAAACGTATCGGCAAGACCTTGAACGCCGATTCCAATCGGTCGAT 4703 Query 62803 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 62862 ||| || ||| | || ||||| ||||| ||||||||||| | ||| || ||||| | Sbjct 4704 GTCGCTGATTGCTCACTTGTGCTTCAGGAATCGGATAATAATTGAGATCAATGATTTTGT 4763 Query 62863 TGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT 62922 |||||||| | || | ||| | || | | ||| ||| | |||| | | Sbjct 4764 TGAGATTTTTCGTAACGATTTTTGTGATTTCGTATAATTTTGCAAATTGAAATT--CTTT 4821 Query 62923 CTATTACAAACATGTT--CAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGC 62980 || |||| | || || |||||| | || |||| ||| || || || || || || | Sbjct 4822 CTGATACACAAATTTTGACAATGCGATGGAAGCCAAATTGCATACTGCCACTTCTTTGGA 4881 Query 62981 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTG 63040 || | || | || || ||| ||| ||||| || | || ||||| | ||| || Sbjct 4882 GTCTGAGTACTCGATGATTTCACAGCAGAGATTGCTTGATCGAATGGTTCCAAGATTCTG 4941 Query 63041 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAAT 63100 ||||| || ||||| || || || ||||| || | || || || || ||||| Sbjct 4942 CTGATTGGATTTACGATTACAAGCGTCTTTGTAAAGCATATACGGCGTTCCGGTCTCAAT 5001 Query 63101 CTGAGATTCTATAATCGCTTTCCAGACGACT-CGAGCCTTTATTATAGATTTGT---ATC 63156 |||| || | ||| || ||| | | | | | |||| | || | || Sbjct 5002 CTGACTATCCAAAATGGCAAACCACA--ATTGCTGGGCTTTGACAGTCTTTCGGGCAATG 5059 Query 63157 TCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCA 63216 | ||| ||||| |||| || || || ||| |||||| | | | Sbjct 5060 T--TTTGAGACTCGTACTTTTTATATAACGCATCAAATTCGCTTCCCCATGTCTCATAAA 5117 Query 63217 ATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 63276 || ||| || | |||||| | || ||| ||| || || | ||| ||||||| Sbjct 5118 GTCGTGGAGCCTCGTTCGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACACGTTTCA 5177 Query 63277 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTC 63336 |||| ||||| || ||||||||||| ||| | ||||| | || ||| || |||| Sbjct 5178 TAAACAGATCGGGGATCCAAAGAGCATAAAACAAATCTCGAGCTCGATGGAGTTCATTTC 5237 Query 63337 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63396 | |||||| || || || ||| | | ||||| | ||||| || || | || | Sbjct 5238 CATGATTCTTACGTAGTTCCAGAAACTCAAAGATATCCGCGTGCCAGGGCTCTAGATAAA 5297 Query 63397 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63456 | || | | || ||| || || || ||||| | ||||| ||| |||| ||| Sbjct 5298 TTGCAAAAGACCCTTTCCGCTTCCCACCGCCTTGATCAACGTATCGAGCTGTGTCATTGA 5357 Query 63457 AAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTC 63516 | || | | |||||||| ||| || || || | ||||| || ||| ||||| | Sbjct 5358 ACACCCGAAGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAACTGT 5417 Query 63517 CACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63576 ||| |||||||| ||| | || || || || ||| || || || | | Sbjct 5418 TGGTGGAGCGAATATTGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATACACG 5477 Query 63577 CGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAA 63636 | ||| |||| | |||||| || ||||| || || |||||| |||| | ||||| Sbjct 5478 CACATTGTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATAGAA 5537 Query 63637 AACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63696 |||| || | |||| | |||| ||||||||||| || | || |||| || |||| Sbjct 5538 AACACGACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCATGCG 5597 Query 63697 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63756 |||| | |||| || | | | ||||| || | | | | ||| | || | || | Sbjct 5598 TAAAGAACTTTTGTGACATGTGTTCATACGTTTCCAAAACGGCGTCCAAATTCTCTTTGT 5657 Query 63757 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA-ACAATTTTGTTGTTT 63815 | || || || || || ||||||| ||| || || || | |||| ||| |||| || Sbjct 5658 GTATGCCGACAGCCACTCGCATTATCATATGTTGTGGGCGTTCACACACTTTT-CCATTC 5716 Query 63816 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63875 | ||||| || ||||| |||| ||||||||| |||||||||| ||| ||||||| Sbjct 5717 ACACGCAACAGATACGATTTCTCCAGAGTTTTAAAGCCAAAATAGTCGTAATCAAAGTCT 5776 Query 63876 CGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTA 63935 | || ||||| | |||||||| || || | | |||| || || ||| Sbjct 5777 CTATCACCGATAATTGCGGAATTGAGAGCTTCTTTGTTCTCCATAACAAT-TCGATGCAC 5835 Query 63936 ATACTTG--AAATAATCGGAGAATG---TTTCCCATTTTTAGGATTAACATAGTTGAATA 63990 || ||| | |||| |||| | ||| ||| | ||| | || |||| Sbjct 5836 ATCGTTGGCGATTAAT-GGAGCGGGTACTTTGGTGGTTTCGTGCTTATTTTCGTAAAATA 5894 Query 63991 AATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTA 64050 | | || |||||| || | ||| ||||| | || |||| ||| || || || | Sbjct 5895 A---TTGAATGTTTTCACTGAAGACTTTGTTTGTATTTTTATGTAAATTGGAAATAGCAA 5951 Query 64051 TTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGG 64110 ||| || || | ||| |||| ||||||||||| | || ||||| |||| | Sbjct 5952 TTCGAGCAGCCAATTTGGAGAAATCGGGATGTTGTGTGCTGCAGTAAGCTGCGGTTTCTG 6011 Query 64111 CTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCA 64170 |||||| ||||||||| || || || || ||| | || ||| || ||| Sbjct 6012 CTGCCAATTCGTCCAATTCCGATGTGGTGACGCCCGGATACACGCCAGCAATCACTTTCT 6071 Query 64171 TAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTCTAATAC 64230 || ||||| | ||||| | | || ||||||||| ||||| | |||| | || | Sbjct 6072 GAGATATTTGGACGGGATCAACGTATTCTGTGTTTAAGTTGTAGCAGAGTTTTGTGATTC 6131 Query 64231 GAGACGTGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGACAAACA 64290 | | |||||||| || || |||| ||| || ||| | ||||| |||||| ||| Sbjct 6132 GCGCAGTGATTTTGTCGAATTTGACGACTTCTTTTCGTCCGTCACGTTTGATGACATACA 6191 Query 64291 TTTT 64294 |||| Sbjct 6192 TTTT 6195 Score = 89.7 bits (98), Expect = 6e-13 Identities = 133/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 62076 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62135 || || |||||||||||||| || || ||||| ||||| |||| |||||||| Sbjct 3971 GTTCGGAGATAGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGAA 4030 Query 62136 GTTAGTTTGGAATAAC--TCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGA 62193 || ||||| | | || |||| || || || || ||||| | |||||||| ||| | Sbjct 4031 GTGAGTTT--ACTGACAGTCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAAA 4088 Query 62194 TGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAG 62253 || | ||||| | || |||||||| | | |||| |||||| |||||||||| | Sbjct 4089 TGTACGCTCCTCGATCGGCAGCCATGTCCAAAATCGCCTTTTGCTTGATTTCCCAAACTG 4148 Query 62254 TTTTATA 62260 |||| || Sbjct 4149 TTTTGTA 4155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629760451925520