Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2330 159 8e-34 seq3420 152 1e-31 seq1573 125 2e-23 seq3284 118 2e-21 seq623 84.2 5e-11 >seq2330 Length=206 Score = 159 bits (176), Expect = 8e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || ||||||||||| || || || || | ||||| | ||||||||||||||| Sbjct 4 TGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGAGTACGTCCGTCTTCTAGTTGT 63 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| || || || | || ||||||||||| ||||||||||| || |||||||| Sbjct 64 TTACCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGAATCTTG 123 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || |||||||| || | || ||| || || || || | || || ||||| |||||| Sbjct 124 GCCTTTACATTATCGATCGTGTCGGAAGACTCAACTTCCAAAGTGATGGTCTTTCCAGTA 183 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || ||||| ||||| |||||||| Sbjct 184 AGCGTTTTCACAAAAATCTGCAT 206 >seq3420 Length=11708 Score = 152 bits (168), Expect = 1e-31 Identities = 162/214 (76%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | ||||||||||||||||| || || || | || || | |||||| Sbjct 281 AAGCACCAGATGAAGCGTAGATTCTTTCTGAATGTTGTAATCCGCAAGCGTGCGACCGTC 222 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| |||||||| ||||| || || || | || ||||||||||| |||||||| || || Sbjct 221 TTCCAGTTGTTTACCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTC 162 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| || |||||||| || | || || || || || || | |||||||| Sbjct 161 TTGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAACGTAATAGT 102 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || ||||| || || || ||||| || |||||| Sbjct 101 TTTCCCAGTTAGCGTCTTAACAAAAATTTGCATT 68 >seq1573 Length=148509 Score = 125 bits (138), Expect = 2e-23 Identities = 386/590 (65%), Gaps = 13/590 (2%) Strand=Plus/Plus Query 268703 TTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCT 268762 ||||| ||||||| ||||| || ||| || ||| ||||| || | || | || Sbjct 117954 TTTGTCTTATTTCCGATACAACAATCTGAGATTTGGGACATGTATAAGAAAGCAGAGGCA 118013 Query 268763 TCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATTTA 268822 |||||||| | ||||||| | ||| || ||||| | | || ||| ||| || Sbjct 118014 AGCTTTTGGACCGCAGAAGAAATCGATTTGGTGCATGACATGAATGACTGGCTTAATATA 118073 Query 268823 AAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGT 268882 | |||||| ||||| | | | || || ||||||| |||||||| Sbjct 118074 TCGGACAATGAAAGACACTTTATCAAACACGTGTTGGCCTTCTTTGCAGCCAGTGATGGA 118133 Query 268883 ATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGA 268942 || || || |||||||| | ||| ||| | ||||| ||||| || ||||| || Sbjct 118134 ATTGTCAATGAAAATCTCGCCATGAATTTCAGCAGTGAGGTTCAGATCCCCGAAGCTCGA 118193 Query 268943 TGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTA 269002 || ||||||||||| || || || ||||||||||| || || || |||| |||| Sbjct 118194 TGCTTTTACGGATTTCAAATTGCAATAGAAAATATACACTCGGAAGTGTATTCGTTATTG 118253 Query 269003 ATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCT----TCTATGAG 269058 || ||||| || || | ||| |||| | |||| | |||| || | || Sbjct 118254 ATTGATACATACATCAAAGAT-CCAACTGA---AAAACAGCATTTACTGTGCGCGATTGA 118309 Query 269059 AACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGG-ATAAACGATAGCG 269117 ||| || || || | || ||| | ||||||| |||||||| | | | || Sbjct 118310 AACAATCCCGTGCGTTACCAATAAAGCACAATGGGCGTTGAAATGGTGCGATCCAAAGTA 118369 Query 269118 CGCCT--TACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGG 269175 |||| | | |||||| | || || ||||| || || ||||| || || || || || Sbjct 118370 TGCCTCGTTTGCAGAAAGAGTGGTAGCCTTTGCGGCCGTCGAAGGAATCTTTTTCTCCGG 118429 Query 269176 GTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGA-TTAACTTTCT 269234 || || | |||| |||||| |||||||| |||| | ||||| ||| || |||| | Sbjct 118430 ATCATTCTGCTCTATATTTTGGCTGAAGAAACGAGGATTGATGCCTGGACTTTGCTTT-T 118488 Query 269235 CTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGT 269284 | || || | || || | || ||||| |||| || ||||| || ||| Sbjct 118489 CAAATGAGCTCATCAGTCGTGATGAAGGACTACATTGTGACTTTGCATGT 118538 >seq3284 Length=77587 Score = 118 bits (130), Expect = 2e-21 Identities = 115/143 (80%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 |||||| | ||||||||| ||||||||||| ||||||||||| | ||||| |||||||| Sbjct 66917 TAGAGTACGACCGTCTTCAAGTTGTTTTCCGGCAAAAATTAGACGTTGTTGGTCAGGAGG 66858 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCT-TTTACATTTTCTACGGTAT-CGCTAGGTTCT 104509 |||||||| || || |||||| ||||| || ||||| || | || | |||| | |||| Sbjct 66857 AATTCCTTCCTTGTCTTGAATC-TTGCTCTTGACATTGTCAATCGTGTCCGCT-GATTCT 66800 Query 104510 ACCTCTAGTGTAATAGTCTTACC 104532 || || |||||||| || || || Sbjct 66799 ACTTCGAGTGTAATTGTTTTTCC 66777 >seq623 Length=41192 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || |||||||| || |||||||||||| || || || | || |||| ||| ||| Sbjct 13021 AGAACCAGATGTAACGTGCTTTCTTTCTGAATGTTGTAATCCGCTAATGTTCGACCATCT 12962 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 || | |||||| ||||||||||| || | |||||| || || || || ||| Sbjct 12961 TCCAATTGTTTCCCAGCAAAAATGAGACGCTGTTGGTCCGGGGGAATACCT 12911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151291313112372