Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1573 260 2e-64 seq534 201 1e-46 >seq1573 Length=148509 Score = 260 bits (288), Expect = 2e-64 Identities = 597/891 (67%), Gaps = 21/891 (2%) Strand=Plus/Minus Query 33019 TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATG 33078 ||||| || || ||||| || ||||| || |||||||||| || || || | ||||| Sbjct 118822 TATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAATCATATCCATC 118763 Query 33079 AAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTA 33138 | ||||| ||||| | | | | ||| | || | | || | | || | ||||| | Sbjct 118762 CAGTCAAAGGGATTAGAAGCGTGATATAACTTGCTGACGCCAAGTGCATGTAACAATCGA 118703 Query 33139 TCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 33198 ||||| || || || || ||| ||||| |||||||||| || || | ||| Sbjct 118702 TCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCTCGACT 118643 Query 33199 GGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTA 33258 ||||| | | | |||||||||||| ||| || || || | || || | | Sbjct 118642 GGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAATGATTGCATGA 118583 Query 33259 ACGGTTTCTTCACTCGGTGGATGCAA---TAAATGTTTAAA---CATCAAACATGCGAAA 33312 | | |||| |||| || || |||| | ||||| |||||| || Sbjct 118582 ATAGAGCCTTC------TGGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGCAAAG 118529 Query 33313 TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATT 33372 || || || || || || || | ||| || || || || ||||| ||||| ||||| Sbjct 118528 TCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCATC 118469 Query 33373 AGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCT 33432 | || || || || ||||||||||| || ||||||||| || || ||||||||||| Sbjct 118468 AATCCTCGTTTCTTCAGCCAAAATATAGAGCAGAATGATCCGGAGAAAAAGATTCCTTCG 118409 Query 33433 ACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATC-CACT-TTT 33490 || || |||||||| | | ||| ||| || | ||| | || ||| ||| ||| Sbjct 118408 ACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTT-TGGATCGCACCATTT 118350 Query 33491 GA--GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33548 | ||||| | || || || | || || || || ||||| || || | | || Sbjct 118349 CAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCACAGTAAATG 118290 Query 33549 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 33608 | ||||||| | |||||| | || ||||| ||||| | ||||| |||||| || Sbjct 118289 CTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAGTG 118230 Query 33609 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 33668 || ||||| || || || ||||||||||| || |||| ||| |||| ||||| || || Sbjct 118229 TATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTGAACCTC 118170 Query 33669 TGTAC--AAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 33726 | | ||| || | || | ||||||||| || ||||| |||||||||||||| || Sbjct 118169 ACTGCTGAAATTCATGGCG--AGATTTTCATTGACAATTCCATCACTGGCTGCAAAGAAG 118112 Query 33727 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATA 33786 ||||| || ||||| ||||| | | |||| | | || ||| ||| ||||| || Sbjct 118111 GCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATATATTAAGCCAGTCATTCATG 118052 Query 33787 TCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATG 33846 || | | ||| | |||||| | |||||||| ||||||||| || ||||||||| Sbjct 118051 TCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCTTTCTTATACATG 117992 Query 33847 TTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897 | ||| || ||| | | ||| || || || | ||||| | || |||||| Sbjct 117991 TCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCGGTTCGGATTT 117941 >seq534 Length=9540 Score = 201 bits (222), Expect = 1e-46 Identities = 1025/1623 (63%), Gaps = 22/1623 (1%) Strand=Plus/Plus Query 62632 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 62691 || |||| || ||||| || || | || || || || | || | ||| ||||||| Sbjct 4584 CGAAATACATCGTTTCAAAAATTTCTTTGTTGAGCTCGCGAGCAGCTTTGCTTTCAAATG 4643 Query 62692 GATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62751 || | | | || | ||||| || || | |||||||| || || || || |||| || Sbjct 4644 GAAGACTCATCAGTAAAAACGTATCGGCAAGACCTTGAACGCCGATTCCAATCGGTCGAT 4703 Query 62752 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 62811 ||| || ||| | || ||||| ||||| ||||||||||| | ||| || ||||| | Sbjct 4704 GTCGCTGATTGCTCACTTGTGCTTCAGGAATCGGATAATAATTGAGATCAATGATTTTGT 4763 Query 62812 TGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT 62871 |||||||| | || | ||| | || | | ||| ||| | |||| | | Sbjct 4764 TGAGATTTTTCGTAACGATTTTTGTGATTTCGTATAATTTTGCAAATTGAAATT--CTTT 4821 Query 62872 CTATTACAAACATGTT--CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGC 62929 || |||| | || || ||| || | || |||| ||| || || || || || || | Sbjct 4822 CTGATACACAAATTTTGACAATGCGATGGAAGCCAAATTGCATACTGCCACTTCTTTGGA 4881 Query 62930 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTG 62989 || | || | || || ||| ||| ||||| || | || ||||| | ||| || Sbjct 4882 GTCTGAGTACTCGATGATTTCACAGCAGAGATTGCTTGATCGAATGGTTCCAAGATTCTG 4941 Query 62990 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAAT 63049 ||||| || ||||| || || || ||||| || | || || || || ||||| Sbjct 4942 CTGATTGGATTTACGATTACAAGCGTCTTTGTAAAGCATATACGGCGTTCCGGTCTCAAT 5001 Query 63050 CTGAGATTCTATAATCGCTTTCCAGACGACT-CGAGCCTTTATTATAGATTTGT---ATC 63105 |||| || | ||| || ||| | | | | | |||| | || | || Sbjct 5002 CTGACTATCCAAAATGGCAAACCACA--ATTGCTGGGCTTTGACAGTCTTTCGGGCAATG 5059 Query 63106 TCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCA 63165 | ||| ||||| | |||| || || || ||| |||||| | | | Sbjct 5060 T--TTTGAGACTCGTACTTTTTATATAACGCATCAAATTCGCTTCCCCATGTCTCATAAA 5117 Query 63166 ATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 63225 || ||| || | |||||| | || ||| ||| || || | ||| ||||||| Sbjct 5118 GTCGTGGAGCCTCGTTCGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACACGTTTCA 5177 Query 63226 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTC 63285 |||| ||||| || ||||||||||| ||| | ||||| | || ||| || |||| Sbjct 5178 TAAACAGATCGGGGATCCAAAGAGCATAAAACAAATCTCGAGCTCGATGGAGTTCATTTC 5237 Query 63286 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63345 | |||||| || || || ||| | | ||||| | ||||| || || | || | Sbjct 5238 CATGATTCTTACGTAGTTCCAGAAACTCAAAGATATCCGCGTGCCAGGGCTCTAGATAAA 5297 Query 63346 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63405 | || | | || ||| || || || ||||| | ||||| ||| |||| ||| Sbjct 5298 TTGCAAAAGACCCTTTCCGCTTCCCACCGCCTTGATCAACGTATCGAGCTGTGTCATTGA 5357 Query 63406 AAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTC 63465 | || | | |||||||| ||| || || || | ||||| || ||| ||||| || Sbjct 5358 ACACCCGAAGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAACTGT 5417 Query 63466 CACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63525 ||| |||||||| ||| | || || || || ||| || || || | | Sbjct 5418 TGGTGGAGCGAATATTGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATACACG 5477 Query 63526 CGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAA 63585 | ||| |||| | |||||| || || || || || |||||| |||| | ||||| Sbjct 5478 CACATTGTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATAGAA 5537 Query 63586 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63645 |||| || | |||| | ||| ||||||||||| || | || |||| || |||| Sbjct 5538 AACACGACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCATGCG 5597 Query 63646 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63705 |||| | |||| || | | | ||||| || | | | | ||| | || | || | Sbjct 5598 TAAAGAACTTTTGTGACATGTGTTCATACGTTTCCAAAACGGCGTCCAAATTCTCTTTGT 5657 Query 63706 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 63765 | || || || || || ||||||| ||| || || || | |||| | || || | Sbjct 5658 GTATGCCGACAGCCACTCGCATTATCATATGTTGTGGGCGTTCACACACTTTTCCATTCA 5717 Query 63766 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63825 ||||| || ||||| |||| ||||||||| |||||||||| ||| |||||||| Sbjct 5718 CACGCAACAGATACGATTTCTCCAGAGTTTTAAAGCCAAAATAGTCGTAATCAAAGTCTC 5777 Query 63826 GTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGA 63885 || ||||| | || ||||| || || | | |||| || || ||| | Sbjct 5778 TATCACCGATAATTGCGGAATTGAGAGCTTCTTTGTTCTCCATAACAAT-TCGATGCACA 5836 Query 63886 TACTTG--AAATAATCGGAGAATG---TTTCCCATTTTTAGGATTAACATAGTTGAATAA 63940 | ||| | |||| |||| | ||| ||| | ||| | || ||||| Sbjct 5837 TCGTTGGCGATTAAT-GGAGCGGGTACTTTGGTGGTTTCGTGCTTATTTTCGTAAAATAA 5895 Query 63941 ATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTAT 64000 | || |||||| || | ||| ||||| | || |||| ||| || | || || Sbjct 5896 ---TTGAATGTTTTCACTGAAGACTTTGTTTGTATTTTTATGTAAATTGGAAATAGCAAT 5952 Query 64001 TCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGC 64060 || || || | ||| |||| ||||||||||| | || ||||| |||| || Sbjct 5953 TCGAGCAGCCAATTTGGAGAAATCGGGATGTTGTGTGCTGCAGTAAGCTGCGGTTTCTGC 6012 Query 64061 TGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 ||||| ||||||||| || || || || ||| | || ||| || ||| Sbjct 6013 TGCCAATTCGTCCAATTCCGATGTGGTGACGCCCGGATACACGCCAGCAATCACTTTCTG 6072 Query 64121 AGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAACATAATTTTCTAATACG 64180 || ||||| | ||||| | | || ||||||||| || || | |||| | || || Sbjct 6073 AGATATTTGGACGGGATCAACGTATTCTGTGTTTAAGTTGTAGCAGAGTTTTGTGATTCG 6132 Query 64181 AGACGTGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGACAAACAT 64240 | |||||||| || || |||| ||| || ||| | ||||| |||||| |||| Sbjct 6133 CGCAGTGATTTTGTCGAATTTGACGACTTCTTTTCGTCCGTCACGTTTGATGACATACAT 6192 Query 64241 TTT 64243 ||| Sbjct 6193 TTT 6195 Score = 89.7 bits (98), Expect = 6e-13 Identities = 133/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 62025 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62084 || || |||||||||||||| || || ||||| ||||| |||| |||||||| Sbjct 3971 GTTCGGAGATAGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGAA 4030 Query 62085 GTTAGTTTGGAATAAC--TCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGA 62142 || ||||| | | || |||| || || || || ||||| | |||||||| ||| | Sbjct 4031 GTGAGTTT--ACTGACAGTCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAAA 4088 Query 62143 TGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAG 62202 || | ||||| | || |||||||| | | |||| |||||| |||||||||| | Sbjct 4089 TGTACGCTCCTCGATCGGCAGCCATGTCCAAAATCGCCTTTTGCTTGATTTCCCAAACTG 4148 Query 62203 TTTTATA 62209 |||| || Sbjct 4149 TTTTGTA 4155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622890675328440