Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq534 264 3e-65 seq474 163 7e-35 seq1573 109 1e-18 >seq534 Length=9540 Score = 264 bits (292), Expect = 3e-65 Identities = 809/1224 (66%), Gaps = 35/1224 (3%) Strand=Plus/Minus Query 363387 TATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGT 363446 |||||| || | ||| || |||||||||| || || | ||| | ||||| | | ||| Sbjct 5760 TATTTT-GGCTTTAAAACTCTGGAGAAATCGTATCTGTTGCGTGTGAATGGAAA-AGTGT 5703 Query 363447 -TGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTG 363505 ||||||||| || |||||| ||||||| || ||| | || || || | || | | Sbjct 5702 GTGAACGCCCACAACATATGATAATGCGAGTGGCTGTCGGCATACACAAAGAGAATTTGG 5643 Query 363506 ATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTC----GTGTATTCACGCACGCCACG 363561 | |||| | ||||| ||| | | | || | | || | || ||||| || || Sbjct 5642 ACGCCGTTTTGGAAACGTATGAACACAT--GT-CACAAAAGT-TCTTTACGCATGCAACT 5587 Query 363562 CCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAA 363621 || || | | |||||| ||||| | | || || | || || || ||||| || Sbjct 5586 CCGACGCTTTTCAATGCGGGAACGCCTCGACCCCAATTATCGTCGTGTTTTCTATTATCC 5527 Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||| | || ||||| ||||| || || | ||||| || || | ||||| |||||| Sbjct 5526 ATGCAAGATGATTCTATCGACGGCATTTACGACACGCTGAAACAATGTGCGTGTATTTCA 5467 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCG-TGCACAGAACAGTTACAT 363740 ||| || ||||| ||||| || || |||| |||| | ||| |||||||| || Sbjct 5466 AAGTGGGCTGGCGGTATTGGCGTCAGTATTTCCAATATTCGCTCCACC-AACAGTTATAT 5408 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 |||||| || ||| |||||||| | ||||| |||||||| ||||| | | || Sbjct 5407 TCGCGGGACGAATGGAAGTTCGAATGGAATTGTTCCAATGCTTCGGGTGTTCAATGACAC 5348 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGA 363860 || | ||||| || || || || || ||||| |||||| | ||||| || ||||| || Sbjct 5347 AGCTCGATACGTTGATCAAGGCGGTGGGAAGCGGAAAGGGTCTTTTGCAATTTATCTAGA 5288 Query 363861 GCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGA 363920 ||| || || ||||| ||||||||||| || || || || || ||||| || Sbjct 5287 GCCCTGGCACGCGGATATCTTTGAGTTTCTGGAACTACGTAAGAATCATGGAAATGAACT 5228 Query 363921 ATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGT 363980 || || || ||| |||| ||||| |||||| | | || | |||||||| || || Sbjct 5227 CCATCGAGCTCGAGATTTGTTTTATGCTCTTTGGATCCCCGATCTGTTTATGAAACGTGT 5168 Query 363981 GG-AGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATG 364039 || || || ||||| ||| | || || || |||| |||| | |||| || Sbjct 5167 GGAAGACAACCAAGAA-TGGAGTTTATTCTGTCCGAACGAGGCTCCACGACTTTATGAGA 5109 Query 364040 TATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTA 364099 |||||| ||| | || ||| |||| ||||||| || || | | || || | Sbjct 5108 CATGGGGAAGCGAATTTGATGCGTTATATAAAAAGTACGAGTCTCAAAACATTGCCCGAA 5049 Query 364100 AGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAA 364159 |||| | || ||| | | ||||||||||| ||||| ||||||||||| |||| Sbjct 5048 AGACTGTCAAAGCCCAGCAATTGTGGTTTGCCATTTTGGATAGTCAGATTGAGACCGGAA 4989 Query 364160 CACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTA 364219 | || |||||| | |||||||| | || || || || ||||| |||||| | ||||| | Sbjct 4988 CGCCGTATATGCTTTACAAAGACGCTTGTAATCGTAAATCCAATCAGCAGAATCTTGGAA 4929 Query 364220 CAATTC-AGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACT 364278 | |||| | || ||||| || || || || || || ||| | | || | || Sbjct 4928 CCATTCGATCA-AGCAATCTCTGCTGTGAAATCATCGAGTACTCAGACTCCAAAGAAGTG 4870 Query 364279 GCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTT--TGTAAAAGATGGTACTTTTG 364336 || ||||| || | || || ||||| | | || |||| ||| | | || Sbjct 4869 GCAGTATGCAATTTGGCTTCCATCGCATTGTCAAAATTTGTGTATCAGAAAGAATTT--- 4813 Query 364337 ACCACCAGCATCTTTATGACGTAA--CCTATCAT-GCTACTTGCAATCTCGACAAGGTTA 364393 | | ||| |||| ||| || | | || | ||| |||||| |||| | | Sbjct 4812 -CAATTTGCAAAATTAT-ACGAAATCACAAAAATCGTTACGAAAAATCTCAACAAAATCA 4755 Query 364394 TCGACAAGAATTATTATCCAATTCCTGAAGC-CGAGCGTTCTAATATGCGTCATCGCCCG 364452 | || ||||||||||| ||||||||||| | || | | ||| ||| ||||| ||| Sbjct 4754 TTGATCTCAATTATTATCCGATTCCTGAAGCACAAGTGAGC-AATCAGCGACATCGACCG 4696 Query 364453 ATTGGTCTTGGTGTACAGGGCCTCGCTG--ACGTTTTTA-TGATGCTCAAGATGGCATTT 364509 ||||| | || || || || || || | ||||||||| ||||| | | ||||| Sbjct 4695 ATTGGAATCGGCGTTCAAGGTCTTGCCGATACGTTTTTACTGATG---AGTCTTCCATTT 4639 Query 364510 GATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCA 364569 || | ||||| | || || || || || |||||||| |||||||| || || Sbjct 4638 GAAAGCAAAGCTGCTCGCGAGCTCAACAAAGAAATTTTTGAAACGATGTATTTCGCGGCG 4579 Query 364570 ATGACTGCTTCGTGTGATTTGGCA 364593 ||| ||||| || |||||| Sbjct 4578 ATGGAAGCTTCCATGGAATTGGCA 4555 >seq474 Length=30871 Score = 163 bits (180), Expect = 7e-35 Identities = 280/404 (69%), Gaps = 2/404 (0%) Strand=Plus/Minus Query 111485 AGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAA 111544 |||||| ||| | |||||| | ||||| ||||||||||| || || |||||| |||| Sbjct 11204 AGAAGGCGATTTAGGACCAATCTACGGCTTTCAATGGCGTCATTTCGGTGCAAGTTACAC 11145 Query 111545 AACCATGCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCA 111604 | ||||| | || | ||||| ||||||| | |||| || | || Sbjct 11144 AGATATGCATGCGGATTACAGTGGCCAGGGCTTTGATCAACTCGCCGATGTGATACA-CA 11086 Query 111605 AATTAAGAACA-ACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCAT 111663 || | | ||| ||| || || ||| || || || | || ||||| |||| | | Sbjct 11085 AACTCAAAACTGACCAAAATTGTCGACGTATCATCTTATCCGCTTGGAATCCAACCGATT 11026 Query 111664 TGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGA 111723 | | |||||||| | || || |||||||| |||||||| ||||| || | ||| Sbjct 11025 TAGCCGAAATGGCATTACCTCCCTGTCATCTGATGTGCCAATTTTACGTTGCAAATGGGG 10966 Query 111724 TGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATA 111783 | |||||||||||||| |||||||| |||||||||||||| || ||||| ||||||| Sbjct 10965 AATTATCATGCCAAATGTACCAGCGATCCGCTGATATTGGTCTGGGCGTTCCATTTAATA 10906 Query 111784 TTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTG 111843 |||| || ||||| || | || | || || || | || ||||| |||| || | Sbjct 10905 TTGCTAGCTACGCGCTTTTGACAAAAATGATTGCACACGTGACTGATCTCCAACCCGGCG 10846 Query 111844 AATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCAC 111887 | || |||| || ||||||||||| ||| | |||| || ||| Sbjct 10845 AGTTTGTTCATGTGATCGGAGATGCCCATATCTACATGAATCAC 10802 >seq1573 Length=148509 Score = 109 bits (120), Expect = 1e-18 Identities = 494/771 (64%), Gaps = 18/771 (2%) Strand=Plus/Plus Query 22186 GAAAACGAACAACATTTTATCAAATATATTCTAGCATTCTTTGCTACCGCAGACGGTATA 22245 || || ||| ||| ||||||||| | | | || |||||||| || || || || Sbjct 118077 GACAATGAAAGACACTTTATCAAACACGTGTTGGCCTTCTTTGCAGCCAGTGATGGAATT 118136 Query 22246 GTTTTTGAGAATCTAGTGACTAATTTT-GCATCTGAAATTCAATACCCAGAGGCCAGATG 22304 || ||| ||||| | | ||||| ||| ||| |||| ||| || || |||| Sbjct 118137 GTCAATGAAAATCTCGCCATGAATTTCAGCAG-TGAGGTTCAGATCCCCGAAGCTCGATG 118195 Query 22305 TTTCTATGGTGTGCAAATGATGATTGAAAATGTTCACGCGGAAACATATTC--TAT-GAT 22361 || || || | ||||| || |||||| | ||| ||||| ||||| ||| ||| Sbjct 118196 CTTTTACGGATTTCAAATTGCAATAGAAAATATACACTCGGAAGTGTATTCGTTATTGAT 118255 Query 22362 -GCTACAGTCACTCGTAGAAGATAAAGACGAACAACGAAACTTATTCCGCGCGATTCGCA 22420 | |||| || | ||||| | ||| ||| | ||| | |||||||| | Sbjct 118256 TGATACATACA----TCAAAGATCCAACTGAAAAACAGCATTTACTGTGCGCGATTGAAA 118311 Query 22421 CCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAA--CAATGAACG 22478 | || | | ||| ||||| ||| | |||||| |||||||| | ||| | | | Sbjct 118312 CAATCCCGTGCGTTACCAATAAAGCACAATGGGCGTTGAAATGGTGCGATCCAAAGTATG 118371 Query 22479 T-TCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAG 22537 || || || ||| | | | || ||||| | || ||||| || || || || ||| Sbjct 118372 CCTCGTTTGCAGAAAGAGTGGTAGCCTTTGCGGCCGTCGAAGGAATCTTTTTCTCCGGAT 118431 Query 22538 CATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAA 22597 |||| || | || |||||||| || ||||| | | | ||||| || || ||||||| Sbjct 118432 CATTCTGCTCTATATTTTGGCTGAAGAAACGAGGATTGATGCCTGGACTTTGCTTTTCAA 118491 Query 22598 ATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGA 22657 ||||| | || || || ||||| || || ||| || ||||| ||| || | || || Sbjct 118492 ATGAGCTCATCAGTCGTGATGAAGGACTACATTGTGACTTTGCATGTCTGATGTACTCGA 118551 Query 22658 ATCATATCATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTG 22717 | | | | |||| |||||| | | || | | || || ||| | | || ||| Sbjct 118552 AAC---TGGTAAATAAGCTTCCAGAAGGCTCTATTCATGCAATCATTTCCGACGCCGTTA 118608 Query 22718 AACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCG 22777 | |||| |||| | | || | | ||||| || ||||| || ||| | Sbjct 118609 TCATCGAACAAGAATTTGTACGAGATTCACTTCCAGTCGAGCTAATTGGAATGAATTCAA 118668 Query 22778 AATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGG-TTAT 22836 | ||| || ||| || | ||||| || ||||| | ||| | |||| || | Sbjct 118669 GTTTGATGGGTCAATACATCGAGTTTGTGGCGGATCGATTGTTACATGCACTTGGCGTCA 118728 Query 22837 GCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGA 22896 || ||| ||| ||| |||||| ||||| |||||||| | ||||| || ||||| Sbjct 118729 GC-AAGTTATATCACGCTTCTAATCCCTTTGACTGGATGGATATGATTTCTCTGCAAGGA 118787 Query 22897 AAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTT 22947 || || || || || || ||| | ||||| ||||| ||| | |||||| Sbjct 118788 AAAACAAACTTTTTTGAGAAACGCGTTGGAGAATATGCGAAATCTGGTGTT 118838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303232380376538