Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2330 105 6e-18 seq2230 102 7e-17 seq623 95.1 1e-14 >seq2330 Length=206 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | || || || ||||||| | ||||| ||||| || Sbjct 206 ATGCAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCTTCC 147 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | ||| | || | ||| ||||||||||| ||||| ||||| || Sbjct 146 GACACGATCGATAATGTAAAGGCCAAGATTCAA-GACAAAGAAGGAATTCCTCCTGATCA 88 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || || || || |||||| ||||||| | || ||| | | |||||||| Sbjct 87 GCAACGTCTGATCTTCGCTGGTAAACAACTAGAAGACGGACGTACTCTTGCGGATTACAA 28 Query 25178 TATTCAAAAAGAATCCACGCTACATTT 25204 || || |||||||| ||| | || || Sbjct 27 CATCCAGAAAGAATCAACGTTGCACTT 1 >seq2230 Length=15872 Score = 102 bits (112), Expect = 7e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || |||||| || || || ||||| | ||||| ||| | ||||| | || || || || Sbjct 27 AAGAATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATC 86 Query 25055 GTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || ||||| ||||| ||||| | || | ||| ||||| ||||| ||||| || | Sbjct 87 ATCCGACACGATCGATAATGTGAAGGCGAAGATTCAA-GACAAGGAAGGAATTCCTCCCG 145 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 |||||||||| | ||||| || || |||||||| || || | || || | | |||| Sbjct 146 ACCAACAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCTCGCGGATT 205 Query 25174 ACAATATTCAAAAAG 25188 |||| || ||||||| Sbjct 206 ACAACATCCAAAAAG 220 >seq623 Length=41192 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| ||||| || ||||||||||| | |||||||| || |||||||| ||||||| ||| Sbjct 12911 AGGTATTCCCCCGGACCAACAGCGTCTCATTTTTGCTGGGAAACAATTGGAAGATGGTCG 12970 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 || | | |||||||| ||||| |||||| |||| ||||| | || ||| Sbjct 12971 AACATTAGCGGATTACAACATTCAGAAAGAAAGCACGTTACATCTGGTTCTA 13022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433289663878085